HsaINT0077384 @ hg38
Intron Retention
Gene
ENSG00000105707 | HPN
Description
hepsin [Source:HGNC Symbol;Acc:HGNC:5155]
Coordinates
chr19:35065868-35066571:+
Coord C1 exon
chr19:35065868-35066032
Coord A exon
chr19:35066033-35066248
Coord C2 exon
chr19:35066249-35066571
Length
216 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
3' ss Seq
CCCCAGCTGTCTTTCCCCAGACT
3' ss Score
8.03
Exon sequences
Seq C1 exon
GGCGACAGCGGTGGTCCCTTTGTGTGTGAGGACAGCATCTCTCGGACGCCACGTTGGCGGCTGTGTGGCATTGTGAGTTGGGGCACTGGCTGTGCCCTGGCCCAGAAGCCAGGCGTCTACACCAAAGTCAGTGACTTCCGGGAGTGGATCTTCCAGGCCATAAAG
Seq A exon
GTGAAAGTTGGGTCCAGATGGGAGCCAGGGTGGGGACGTTTGGGTGTCTAATGGGGGAAGGGAGGCAGAGATTTGTTTTAGGAAACCTACGCTCAGGCCTAGAAGAGGGCCCCCCTTGGGAACAGATGGACTTTGAAGGGTTCCTGGGGAAGGGAAGCCAGTGGTGGGACGTGGAAGCCTCTCAGACCTCGGGAGCCCCCAGCTGTCTTTCCCCAG
Seq C2 exon
ACTCACTCCGAAGCCAGCGGCATGGTGACCCAGCTCTGACCGGTGGCTTCTCGCTGCGCAGCCTCCAGGGCCCGAGGTGATCCCGGTGGTGGGATCCACGCTGGGCCTAGGATGGGACGTTTTTCTTCTTGGGCCCGGTCCACAGGTCCAAGGACACCCTCCCTCCAGGGTCCTCTCTTCCACAGTGGCGGGCCCACTCAGCCCCGAGACCACCCAACCTCACCCTCCTGACCCCCATGTAAATATTGTTCTGCTGTCTGGGACTCCTGTCTAGGTGCCCCTGATGACGGGATGCTCTTTAAATAATAAAGATGGTTTTGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105707:ENST00000392226:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.6=89.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCCCTTTGTGTGTGAGG
R:
GACCGGGCCCAAGAAGAAAAA
Band lengths:
295-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development