RnoINT0078740 @ rn6
Intron Retention
Gene
ENSRNOG00000047628 | Khsrp
Description
KH-type splicing regulatory protein [Source:RGD Symbol;Acc:621828]
Coordinates
chr9:10016141-10016772:+
Coord C1 exon
chr9:10016141-10016237
Coord A exon
chr9:10016238-10016733
Coord C2 exon
chr9:10016734-10016772
Length
496 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
ACAGAGTCTCTCATCCACAGACC
3' ss Score
7.08
Exon sequences
Seq C1 exon
ATTGCAGCCAAAATCGGAGGTGATGCTGCTACCACCGTGAATAACAACACTCCTGATTTCGGTTTTGGGGGCCAAAAGAGACAGCTGGAAGATGGAG
Seq A exon
GTAACTCGTGGCGGTGGCGGTGGCGGGCTTAGAGCTGAGAGTAGCATTTTTTGTCCCATTGGGGTTTCAAGACAGGGGAGCCAGCCCAGCTTTTTGTTCCATCTGCCACCTTAAGTATCAGGTAGCTGAGAGAAGGACAGGTCGATTGTGACAGGGGAGAGTAGTAGGTTCTGAAGATTGCTCCTTCCTTGTGAGAGACTGACACAGGGCACAAAGTAGCTCTTAAGCAGGGCATTTGTTTCCTGGGCAAGTCTAACTCTAGTCTGGAAGGACCCTGTGTTGTTACTAATGTTTGTGTATTAAAAGTGAACTTTATCACTCTGAGGTAGTGAATGACTTGGGCATGTTGCCCCTTTCTGAGCCAGCACCTTCTAACTCTCCATCTTGGCTGTCATGTGGAACTGGTGGTGACTGTGCCTAGAACATGCCGCACCAGCTTGGGGTTGAGGTGTTGCAGGTGGGTAGTGTCACATCTGACAGAGTCTCTCATCCACAG
Seq C2 exon
ACCAGCCAGACAGCAAGAAACTGGCTTCCCAGGGAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047628:ENSRNOT00000072033:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]