GgaINT0039151 @ galGal4
Intron Retention
Gene
ENSGALG00000008939 | FUBP1
Description
far upstream element-binding protein 1 [Source:RefSeq peptide;Acc:NP_001006535]
Coordinates
chr8:17791974-17793948:+
Coord C1 exon
chr8:17791974-17792064
Coord A exon
chr8:17792065-17793909
Coord C2 exon
chr8:17793910-17793948
Length
1845 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
AAAAAATCTTAATTTTGCAGATC
3' ss Score
8.28
Exon sequences
Seq C1 exon
ATTGCAGCAAAAATTGGAGGAGATGCTGGTACATCCATGAATTCCAATGACTACGGTTATGGAGGACAAAAAAGACCTCTCGAGGATGGAG
Seq A exon
GTATGAGCTCGTTACTGCTGCATTTATTTTTGTTCAGTGTGGGCATGGTGCCAGAAAGATTTCAGGTGCTTTTTTTTGTTTTGCTTTCCATAGCACAGTAGAAGAGTGTTTTGTTCCCTTTATAGAGCATGACGTGCTTTTTCATTTTCAGTTCAGTGGGGAAACTTCTTTTAAACCACATAAGCCTGTTATAAAATATTTTAAAGTGTGGCTTAAAAACTATTAAGAAGAAAGTGTGTGCTGGGGAGGGGGGCAGATAATTTTGTGGCCGAGAAACGCTTGTTACAGGTATGTCATTGAAGTCTTCTGTTTCTTACGTCTAACAGATTGCAGTTTCCAAATTGTAATTAGAATAAGAAGTGGCCACTCTTTGGGTTGTTTCATATACTTTATGATAACACAGGTTCATTTAAAAGTATTAATGCATTTTATTGTAAAAGCATAGGACTTCAAACAAAGACAGGAAAGTAAATTTTCTACCTTGTAGACACTTTTACTTAGTCTATTATTAAAGTATATAGTATATATGAGTTCATGCTTAAGTCTCCTAGTTTGTTGCAGATTTTTGGAGTTCCTTTATACTGTAATAAAGATTTCTCTTGAAGTGTGTGTGTGTGTCCTCTTCTGTCTCTTACTAAGCAGCCAGTTTTAACTGAACAGGGTTTGATATGTTTAGTAAACTCAAAAAACCTGGCTAAAATATGGAAAGAAATCTCTGAACTTGTTGAAATGTTCTCGTAGGCCTTACAAAAGGGCAGTGGTTTTTTGTTGTTTCTTTTTTTTCCTTTGAGAGAGGATTGAAACTCAGTCTACAGAATGTAACTAAGGCTTTATATCAGGAGTTCTTGTGTCCTGTAATAAAGTTTTTTTTCTATTGATGGTGAGGTTTTTAATATACAAAAATGAGCTAATGATGCTTCAGATGATATATGTAATGTATTCTTTTTATTTTATGTGTAGATGGCTCTTGGACAAGTCCGAGCAGTACAACACACTGGGAGGGAATGCCCTCTCCTTTTAAAGGCAGGAATTTTTATTTATTACCTGTGTTTAGTATGTAAACATGACATAAACTAGTGGATCTTTCTGGATAGACACAAATATTTCTTGGAGTATGTGTCTTGAATTTTTGCTGCACATGAATTATGGTGGTTCATATGACCTATATTTTGGGGTGGGAAGGAAGCATCTGAAGTCTATCCTTTCAGATAAAGGTTAATTATGCTTTTTATTCCTTTACTGTGCAAAAAGGATTTGGATGGTAGTGATGTAGTTGCTTTGAATCTGCTTTTTTTTTTTTTTTTTTTTGAAGTTTTATGCTATGAAATGCTTGATATTTGGATAGGAATTTTGTACCAACATCCAGGTTGAGATTGCATTGCTATGTGATACTGTTGTTTTCAAATGTTTGATTTAGACTTGTAGTCATTGTCAGATTTTTTTCATTATTGTTAGTTTTTTATGGATTTTTTTTTTAACTATAGAAGCATCATTAGCTTGAGCAACCAATAGACCTAAACTTTGTTCCTTGTCTTAGTTAAGTTTCAGTGACTGGGTATCTGAGCGATCTACAGCGTGTTCTAAAAACTCCACCTTTTGTTTAACTACTGAATAGATACACAGAAAAACCTAACATCTTTTCAGCTGTACTAACCAAGTGCTGAGTGCTCGTGAGATTCTTTCTTCTATTCAGATGATCAACTCCCTGAAATTGGAGAAAAATAAAAAAAGGAAAAATAAAAAAGGGGGACTAAAATACACTGGAAAGTTGCACTTCACACTAAAAGGTGTTAACGGTTCTTGAATTTCTTGGCAAAAAAAATTTAAAAAATCTTAATTTTGCAG
Seq C2 exon
ATCAACCAGATGCTAAGAAAGTTGCTCCTCAGAATGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939:ENSGALT00000014525:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]