RnoINT0062942 @ rn6
Intron Retention
Gene
ENSRNOG00000043370 | Fubp1
Description
far upstream element binding protein 1 [Source:RGD Symbol;Acc:1591892]
Coordinates
chr2:257429555-257431237:+
Coord C1 exon
chr2:257429555-257429645
Coord A exon
chr2:257429646-257431198
Coord C2 exon
chr2:257431199-257431237
Length
1553 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
AAAGACACTTAATTTTGCAGATC
3' ss Score
6.43
Exon sequences
Seq C1 exon
ATTGCAGCAAAAATTGGGGGTGATGCTGGTACATCATTGAATTCAAATGACTATGGTTATGGGGGACAAAAGAGACCCTTAGAAGATGGAG
Seq A exon
GTAAGTTATAGCCAGCAAGAATAATTATCTTCCACAGTATTCATTTGATAAGATTTTCAGTATTGTTTACTGAGATGATCTATCAAAATCCTACTATCTATTGATCTCAGAAGGATAGGGTTTTGAAAAAGACAGACCTAGAAAAGGTGGGTATAAGTTGAGTATCAGAAAGTATTATCGTAATAGAAAACAGTTCTTTTTTTGTCCTGTTTTTAGGATTATGCTTTGAGTTTGCACAGACTGTTAATGCTAGAAACAAAATAAAATTATAAGTTATTTGGGAACATTTTACTAGGTTTTCTCATTTATTGGATGAGTCTTGATATTTCCTTTCATTAATTTACTTTGAAATTCCCTTTAAAGTTTAAGGTCTGTTTGTTGCAGGCATCCCGTTTTTATATTGTTTAGTGCTTTGTTGTGTGTTTCATTTCTAACTTTAAGCATGGATTAAAAATAGTGGATTCATAGTGCTTTCTCTTTTAAAAAAAACTTTGACACTTCTGTACTTAGAAGTGTGTACTTTTTTGTTTTAGTTCTGATCTATGTATAAATTTTGATAGTCTTTGCCCTTTCATAAAAGATTCTGACAGCATATAGAACTGTATTTGTGGCCCTTTCTGGTAATACTTGGTTTCCTTTTGTTTAAGTATGTTTATATTTGCAAGTGAGGTTTTTAAAATGCAAGAAAAAAATGAGCTAATGATGCTTCAGATGTTGTGTGTAATGTACTCTTTTTATTTTATGTGTAGATGGCTCTTGGACAAATCCGAGCAGTACCACACACTGGGAGGGAATGCCCTCTCCTTTTAAAGGCAGGAATTTTTATTTATTACCTGTGTTTAGTATGTAAATGTGAAATAAACCAGTGGATTCTTAAATGGACACCATGGTCTCTCTTGGTTTATGTGTCTGAATTTTTGCTGTACAAAAGCCTTGAAGTTGGGAGAATAAAAAGTGTTTTGAGCTATAGGCTGTCTATTCTCTAATGTTGTATGCATTTTGTTTATCTGAGAAAGGCAATCATGTGGTTGCTTTGAAGTTTTGGTTTTTGTAGTGAAATGCTTCTTTTGAGAATAATAGAACAGTTTAGATTGAAATTGTCTTGTAATGTGAGCTTTCTTTTTTGGTATAGCTTTATGCACTGTCAGATACACTCACCTTTTGATATGTCTGATTTTTATGTAGTTCTCCCTAATTGTCAGTTCCTACAGTGGAAGAAGCATCATTAACCATTAGCATAAGGTATTCGCCAGCATTGGAGCTAAGTAGTGTGTGCTGTATTATTCTAAACTATCCAAAGTGTCTGTGCGTTGTTTAAACACAAGAGAATGAAAGAATTTAAGTTTTGTGGGTTGGTTTTTTTGTTTGTTTAGATTTTTGAGTTTAGGGGTTTTTATTTTTTTTAGATGTTAAGTCTAGGTTGAATTCTGGCAGTTTTGATTCAAGTGGTAAATCATTATATCAGCTGTTTTAATAAACATTGCTATTCTTGCTTGGTGGGGGGAGAGCTTTGTTTTTAATTGACAAAAAGTAAAAGACACTTAATTTTGCAG
Seq C2 exon
ATCAACCAGATGCTAAGAAAGTACCTCCCCAAAATGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043370:ENSRNOT00000066199:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.871 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]