RnoEX6011952 @ rn6
Exon Skipping
Gene
ENSRNOG00000043370 | Fubp1
Description
far upstream element binding protein 1 [Source:RGD Symbol;Acc:1591892]
Coordinates
chr2:257425679-257431237:+
Coord C1 exon
chr2:257425679-257425895
Coord A exon
chr2:257429555-257429645
Coord C2 exon
chr2:257431199-257431237
Length
91 bp
Sequences
Splice sites
3' ss Seq
TATTCTGATTTTTTTTTAAGATT
3' ss Score
7.94
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGCAAGAATGTGATACAGCCTCGACGGCCGCCATCTTATTTCTTTCTTAGCAGTTAGCCGAGAGGGGAACCTCCGCGAGGAAACAGCGGCGTCTTCTATAGCGTGGGTATGGCCGACTACTCAACAGTACCTCCGCCGTCTTCTGGCTCAGCTGGCGGCGGCGGCGGCGGAGGAGTTAATGATGCTTTCAAAGATGCCCTGCAGAGAGCGCGGCAG
Seq A exon
ATTGCAGCAAAAATTGGGGGTGATGCTGGTACATCATTGAATTCAAATGACTATGGTTATGGGGGACAAAAGAGACCCTTAGAAGATGGAG
Seq C2 exon
ATCAACCAGATGCTAAGAAAGTACCTCCCCAAAATGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043370-'1-4,'1-0,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=0.871 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACAGCGGCGTCTTCTAT
R:
TGGGGAGGTACTTTCTTAGCA
Band lengths:
169-260
Functional annotations
There are 1 annotated functions for this event
PMID: 20711187
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, biolayer interferometry, nuclear magnetic resonance. ELM ID: ELMI002512; ELM sequence: FKDALQRARQI; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]