MmuEX6074755 @ mm9
Exon Skipping
Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:151873422-151878594:+
Coord C1 exon
chr3:151873422-151873664
Coord A exon
chr3:151876941-151877031
Coord C2 exon
chr3:151878556-151878594
Length
91 bp
Sequences
Splice sites
3' ss Seq
ATTCCGATTTTTCTTTTAAGATT
3' ss Score
8.53
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCCCCTTTACGGCACGATGGTCGTGCAAGAATGTGATAGAGCCTCGACGGCCGCCATCTTCTTCCTTTCTTAGCAGTTAACCGAGAGCGGCGCCTCCCTCCGCGAGGAAACGGCAGCGTGTGCTGTAGCGTGGGTATGGCCGACTACTCCACAGTGCCTCCGCCGTCGTCTGGCTCGGCTGGCGGCGGCGGCGGCGGAGTCGTTAACGACGCTTTCAAAGATGCCCTGCAGAGAGCGCGGCAG
Seq A exon
ATTGCAGCAAAAATTGGGGGTGATGCTGGTACATCATTGAATTCAAATGACTATGGTTATGGGGGACAAAAAAGACCCTTAGAAGATGGAG
Seq C2 exon
ATCAGCCAGATGCTAAGAAAGTACCTCCCCAAAATGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034-'0-3,'0-0,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.856 A=0.946 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAACGGCAGCGTGTG
R:
TGGGGAGGTACTTTCTTAGCA
Band lengths:
171-262
Functional annotations
There are 1 annotated functions for this event
PMID: 20711187
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, biolayer interferometry, nuclear magnetic resonance. ELM ID: ELMI002512; ELM sequence: FKDALQRARQI; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: