GgaEX6044517 @ galGal3
Exon Skipping
Gene
ENSGALG00000008939 | FUBP1
Description
NA
Coordinates
chr8:19591030-19594179:+
Coord C1 exon
chr8:19591030-19591258
Coord A exon
chr8:19592205-19592295
Coord C2 exon
chr8:19594141-19594179
Length
91 bp
Sequences
Splice sites
3' ss Seq
TACATCTGCCTTTTGTTTAGATT
3' ss Score
6.94
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
CTCCCCCCTCCCCGAGCACGATGCAGCGCAGGAATGTGAAAGGCTCCCGCCCGCCGCCATTTTCTTTCTTTCTTGGCAGGCAGCGAGCGGGGCAGGAAGCAGTGGCGGAGCGAGTATGGCGGACTATTCCACGGTGCCCCCTCCTGCTTCGGGCGCCCCCGGGGGAGGCGGTGGTGGAGGTGGAGGAGTGAACGATGCCTTTAAAGACGCGCTGCAGAGAGCTAGGCAG
Seq A exon
ATTGCAGCAAAAATTGGAGGAGATGCTGGTACATCCATGAATTCCAATGACTACGGTTATGGAGGACAAAAAAGACCTCTCGAGGATGGAG
Seq C2 exon
ATCAACCAGATGCTAAGAAAGTTGCTCCTCAGAATGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939-'4-2,'4-0,7-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=0.989 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGTATGGCGGACTATTCC
R:
AGTCATTCTGAGGAGCAACTTTCT
Band lengths:
159-250
Functional annotations
There are 1 annotated functions for this event
PMID: 20711187
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, biolayer interferometry, nuclear magnetic resonance. ELM ID: ELMI002512; ELM sequence: FKDALQRARQI; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]