DreEX6025624 @ danRer10
Exon Skipping
Gene
ENSDARG00000029248 | fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2159]
Coordinates
chr2:8851288-8853915:+
Coord C1 exon
chr2:8851288-8851443
Coord A exon
chr2:8853255-8853348
Coord C2 exon
chr2:8853880-8853915
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATGTTGTTGTTTTTTTATAGATC
3' ss Score
10.12
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTTTCCTCATTCTCGCACGTAACAGCCATCTTCCTTCAGCTCGAGAAGACTGTTCGTGCAGACATGGCCGACTACTCTAACGTGGCTCCGCCGTCTTCGAACGCCGGTGGAGGGATGAACGACGCATTTAAAGATGCTCTTCAGAGGGCCAGACAG
Seq A exon
ATCGCTGCAAAAATAGGAGGTGATGGGGTACCGCCCTCTCCAGTTTCCAATGACTTTGGTTATGGAGGACAGAAGAGGCCCCTTGAAGATGGAG
Seq C2 exon
ATCAACCAGAAACAAAGAAAGTTCCACCAAGTGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029248-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCACGTAACAGCCATCTTC
R:
TGGTGGAACTTTCTTTGTTTCTGG
Band lengths:
173-267
Functional annotations
There are 1 annotated functions for this event
PMID: 20711187
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, biolayer interferometry, nuclear magnetic resonance. ELM ID: ELMI002512; ELM sequence: FKDALQRARQI; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]