GgaINT0039151 @ galGal3
Intron Retention
Gene
ENSGALG00000008939 | FUBP1
Description
NA
Coordinates
chr8:19592205-19594179:+
Coord C1 exon
chr8:19592205-19592295
Coord A exon
chr8:19592296-19594140
Coord C2 exon
chr8:19594141-19594179
Length
1845 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
AAAAAATCTTAATTTTGCAGATC
3' ss Score
8.28
Exon sequences
Seq C1 exon
ATTGCAGCAAAAATTGGAGGAGATGCTGGTACATCCATGAATTCCAATGACTACGGTTATGGAGGACAAAAAAGACCTCTCGAGGATGGAG
Seq A exon
GTATGAGCTCGTTACTGCTGCATTTATTTTTGTTCAGTGTGGGCATGGTGCCAGAAAGATTTCAGGTGCTTTTTTTTGTTTTGCTTTCCATAGCACAGTAGAAGAGTGTTTTGTTCCCTTTATAGAGCATGACGTGCTTTTTCATTTTCAGTTCAGTGGGGAAACTTCTTTTAAACCACATAAGCCTGTTATAAAATATTTTAAAGTGTGGCTTAAAAACTATTAAGAAGAAAGTGTGTGCTGGGGAGGGGGGCAGATAATTTTGTGGCCGAGAAACGCTTGTTACAGGTATGTCATTGAAGTCTTCTGTTTCTTACGTCTAACAGATTGCAGTTTCCAAATTGTAATTAGAATAAGAAGTGGCCACTCTTTGGGTTGTTTCATATACTTTATGATAACACAGGTTCATTTAAAAGTATTAATGCATTTTATTGTAAAAGCATAGGACTTCAAACAAAGACAGGAAAGTAAATTTTCTACCTTGTAGACACTTTTACTTAGTCTATTATTAAAGTATATAGTATATATGAGTTCATGCTTAAGTCTCCTAGTTTGTTGCAGATTTTTGGAGTTCCTTTATACTGTAATAAAGATTTCTCTTGAAGTGTGTGTGTGTGTCCTCTTCTGTCTCTTACTAAGCAGCCAGTTTTAACTGAACAGGGTTTGATATGTTTAGTAAACTCAAAAAACCTGGCTAAAATATGGAAAGAAATCTCTGAACTTGTTGAAATGTTCTCGTAGGCCTTACAAAAGGGCAGTGGTTTTTTGTTGTTTCTTTTTTTTCCTTTGAGAGAGGATTGAAACTCAGTCTACAGAATGTAACTAAGGCTTTATATCAGGAGTTCTTGTGTCCTGTAATAAAGTTTTTTTTCTATTGATGGTGAGGTTTTTAATATACAAAAATGAGCTAATGATGCTTCAGATGATATATGTAATGTATTCTTTTTATTTTATGTGTAGATGGCTCTTGGACAAGTCCGAGCAGTACAACACACTGGGAGGGAATGCCCTCTCCTTTTAAAGGCAGGAATTTTTATTTATTACCTGTGTTTAGTATGTAAACATGACATAAACTAGTGGATCTTTCTGGATAGACACAAATATTTCTTGGAGTATGTGTCTTGAATTTTTGCTGCACATGAATTATGGTGGTTCATATGACCTATATTTTGGGGTGGGAAGGAAGCATCTGAAGTCTATCCTTTCAGATAAAGGTTAATTATGCTTTTTATTCCTTTACTGTGCAAAAAGGATTTGGATGGTAGTGATGTAGTTGCTTTGAATCTGCTTTTTTTTTTTTTTTTTTTTGAAGTTTTATGCTATGAAATGCTTGATATTTGGATAGGAATTTTGTACCAACATCCAGGTTGAGATTGCATTGCTATGTGATACTGTTGTTTTCAAATGTTTGATTTAGACTTGTAGTCATTGTCAGATTTTTTTCATTATTGTTAGTTTTTTATGGATTTTTTTTTTAACTATAGAAGCATCATTAGCTTGAGCAACCAATAGACCTAAACTTTGTTCCTTGTCTTAGTTAAGTTTCAGTGACTGGGTATCTGAGCGATCTACAGCGTGTTCTAAAAACTCCACCTTTTGTTTAACTACTGAATAGATACACAGAAAAACCTAACATCTTTTCAGCTGTACTAACCAAGTGCTGAGTGCTCGTGAGATTCTTTCTTCTATTCAGATGATCAACTCCCTGAAATTGGAGAAAAATAAAAAAAGGAAAAATAAAAAAGGGGGACTAAAATACACTGGAAAGTTGCACTTCACACTAAAAGGTGTTAACGGTTCTTGAATTTCTTGGCAAAAAAAATTTAAAAAATCTTAATTTTGCAG
Seq C2 exon
ATCAACCAGATGCTAAGAAAGTTGCTCCTCAGAATGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939:ENSGALT00000014525:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.989 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]