GgaEX0013094 @ galGal4
Exon Skipping
Gene
ENSGALG00000008939 | FUBP1
Description
far upstream element-binding protein 1 [Source:RefSeq peptide;Acc:NP_001006535]
Coordinates
chr8:17791974-17793948:+
Coord C1 exon
chr8:17791974-17792064
Coord A exon
chr8:17793025-17793087
Coord C2 exon
chr8:17793910-17793948
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTATTTTATGTGTAGATG
3' ss Score
7.62
5' ss Seq
AAGGCAGGA
5' ss Score
1.7
Exon sequences
Seq C1 exon
ATTGCAGCAAAAATTGGAGGAGATGCTGGTACATCCATGAATTCCAATGACTACGGTTATGGAGGACAAAAAAGACCTCTCGAGGATGGAG
Seq A exon
ATGGCTCTTGGACAAGTCCGAGCAGTACAACACACTGGGAGGGAATGCCCTCTCCTTTTAAAG
Seq C2 exon
ATCAACCAGATGCTAAGAAAGTTGCTCCTCAGAATGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAAAAATTGGAGGAGATGC
R:
AGTCATTCTGAGGAGCAACTTTCT
Band lengths:
127-190
Functional annotations
There are 1 annotated functions for this event
PMID: 31911676
[CRISPR screen]. Conserved poison exon with negative fitness/survivability impact when depleted: HeLa Depleted at 14 days (FC=0.748, FDR=0.000), PC9 Depleted at 14 days (FC=0.663, FDR=0.000), Late Xenograft No change (FC=0.803, FDR=0.015).
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]