RnoINT0081735 @ rn6
Intron Retention
Gene
ENSRNOG00000000156 | LOC100911486
Description
multiple epidermal growth factor-like domains protein 6-like [Source:RGD Symbol;Acc:6492904]
Coordinates
chr5:171559890-171560765:+
Coord C1 exon
chr5:171559890-171560018
Coord A exon
chr5:171560019-171560630
Coord C2 exon
chr5:171560631-171560765
Length
612 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TTACGGCTCTGTGTCCTCAGCCT
3' ss Score
7.51
Exon sequences
Seq C1 exon
GCTGCCCCAAGGGCTTCTACGGCAAACATTGCCGTAAGAAATGCCACTGTGCTAACCGGGGCCGGTGCCACCGCCTCTATGGGGCCTGCCTCTGTGACCCAGGGCTCTATGGTCGTTTCTGCCACCTTG
Seq A exon
GTGAGTTCCTCTACATCTGTCTCTGTGAACGGGGAGCACCGTGGCAGCCTCTGTGGATGGGTTGGCTTGGGGTTATAGATCAGCTATATAGAGTCCTATATCACTCCCGTGCTGGCCTCCAGGTATATCAGATGCACTGACCCTAGGCTGGCGTGACTCCTAGCTTTCATCTGGCAGTGCAGGCAAACAGGACAAGACTTCCTAGGGAGCTTCTGGGACACTCTTGGCTTGTGCAACAAAACCAACTCCCCAGCCCCTGGCAGAGTTCACATCTCTGGGTACACTGACTCTCAGGGAAGGAAGGAAACGGTGGATTAGCGCAGAAAGAGGGGGCGATGGTAGTGTTGGATATCTGTGAAAGAGTTTCTTGAGAGGAGAAATCAGGTTTGTCTTAGCTGGAAAGTCGTACGACCTAGGGATAGCATGTCAGCTGTGCAGACCCTAGGGATAGCCCTAGGTCTCCGGGCCACGAACAGATATATATGGCAGGATTCCTAGAAGGTTCTGGAAAGGGACTTGGCTACAGCAGCATACCCTTCTCACCCTTGCTGGCTCCAGCTGGCTGGGGTGGGTGCTGTAGCAGGCAGGCTCCTTACGGCTCTGTGTCCTCAG
Seq C2 exon
CCTGTCCTCCCTGGGCCTTCGGGCCAGGCTGTTCTGAGGACTGCCTTTGCGAGCAGTCACACACAAGGTCTTGCAACCCGAAGGACGGTAGCTGCTCCTGCAAGGCCGGCTTCCAGGGTGAGCGCTGCCAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000156:ENSRNOT00000000169:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.8=36.4)
A:
NA
C2:
PF0005319=Laminin_EGF=PU(70.0=76.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGCTTCTACGGCAAACA
R:
CAGCGCTCACCCTGGAAG
Band lengths:
249-861
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]