HsaINT0101819 @ hg38
Intron Retention
Gene
ENSG00000162591 | MEGF6
Description
multiple EGF like domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr1:3505422-3506236:-
Coord C1 exon
chr1:3506108-3506236
Coord A exon
chr1:3505557-3506107
Coord C2 exon
chr1:3505422-3505556
Length
551 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CAACGGTTCTGTGGGTGCAGCCT
3' ss Score
3.85
Exon sequences
Seq C1 exon
GCTGCCCCAAGGGCTACTATGGCAAGCACTGTCGCAAGAAATGCAACTGTGCCAACCGGGGCCGGTGCCACCGCCTCTACGGGGCCTGCCTCTGCGACCCAGGGCTCTACGGCCGCTTCTGCCACCTCA
Seq A exon
GTGAGTCTCACTGCCCCTTCCAGTGTCCATGGTGGTGGCAGCGGGTGGAAGGGATGGTCCATGTCCTGTTACCTGTAGTCTGGGTTAGGATGAGGCTATCGGGGCCCAGCCAGGTCACCCACTGGGATGTAGGTCTGGGGTCCGCCATGAGTCTGTGGACTCCAAGCCACATCCTCTCGACTGTGACTGTGCTGGCATCCAGGGCGTCTGGGTGGATGGTCCCCAACCTTGTGCCTCCCAGCCTTGATGGGTGGTAGGGCTGCAGATGAGGGCAGGGCCAGGCCTTTTGCAGAAGCCTCCGGGGGATGAGGCCTATCTTGGCTTTTGGAGATTCCTGGCAGCAAGGCCAAGCTCTGAGTCCCTGGTGGGGTCACCCATCCCTGGGGTTCAGACACTCAGGGAAGGGGCGGTGGGCTGCAGGGGGAGAGGTGGAGGAGGACAGCTCCCTACATGATCTTGGCTGTCGTCCTGGCTGACCCAGGGCTGGTGGAAGCGGTCTGGGAGGGTGGGGCTTCAGACGGGAGCCCCCCTCAACGGTTCTGTGGGTGCAG
Seq C2 exon
CCTGCCCGCCGTGGGCCTTTGGGCCGGGCTGCTCGGAGGAGTGCCAGTGTGTGCAGCCCCACACGCAGTCCTGTGACAAGAGGGATGGCAGCTGCTCCTGCAAGGCTGGCTTCCGGGGCGAGCGCTGTCAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162591:ENST00000294599:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.0=36.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAAGGGCTACTATGGCAA
R:
GAAGCCAGCCTTGCAGGAG
Band lengths:
238-789
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development