RnoINT0081738 @ rn6
Intron Retention
Gene
ENSRNOG00000000156 | LOC100911486
Description
multiple epidermal growth factor-like domains protein 6-like [Source:RGD Symbol;Acc:6492904]
Coordinates
chr5:171563874-171564636:+
Coord C1 exon
chr5:171563874-171563999
Coord A exon
chr5:171564000-171564504
Coord C2 exon
chr5:171564505-171564636
Length
505 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ACCCTGGGTGTGGGCTCTAGATT
3' ss Score
6.04
Exon sequences
Seq C1 exon
AGTGCCCGGTGGGAACATTTGGTGTGAACTGCTCAGGTTCCTGTTCCTGCGTTGGAGCGCCTTGTCACCGAGTCACAGGGGAGTGTCTGTGCCCACCAGGGAAGACTGGGGAGGACTGTGGAGCTG
Seq A exon
GTGAGTGGCAGCTACATGCCCAGGCAGCCCCAGCCCTGGACTGCATTTGAAAATACCATCCCGGACCATATTTAGGGACCTCTGGTCCAAGATCTGGGTGGTCACACCATTTAGGACTTTAGCCCTGACCCTGAAGTGTTAGGTTCCTTCATAGTTTCTTCGGGGATTCATCCTGGGACAAGCTGGGATACGGGAGGTGTCTGCAGCTGCTCTGCAGAGCTGTGGCTTTGCACTGTACCCTCCTGGACCATCCGCTCCCTGCATGGAGCATTTGTATCTGTACCAGGCTCTTTTTGCTGTTGAGCTATTCCTGGGGTTGGGTGTACTTATGTATGGGTGGGTGCCCCACAGCCCTGGGGCTTTGAAGGCTGCCTCTTTCCTGGGCAGTCTTTTGCGGCAACAGTGGTCTGTTTCCGGTTGTGGCAAGAGGGAGCTTCAGCGGTATGTTCAGTGTGCCGGCTAGGGCGCTATGAAAAGAATAACTAACCCTGGGTGTGGGCTCTAG
Seq C2 exon
ATTGTCCCGAGGGCCGTTGGGGGCTCGGCTGTCAAGAGATCTGCCCCGCATGTGAGCACGGAGCCAGCTGCAACCCTGAGACTGGAACCTGCCTGTGTCTCCCTGGCTTTGTTGGTAGCCGCTGCCAGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000156:ENSRNOT00000000169:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=PU(73.9=75.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGGGAACATTTGGTGTGA
R:
GGCAGCGGCTACCAACAAAG
Band lengths:
246-751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]