DreINT0095022 @ danRer10
Intron Retention
Gene
ENSDARG00000079199 | megf6a
Description
multiple EGF-like-domains 6a [Source:ZFIN;Acc:ZDB-GENE-090312-12]
Coordinates
chr23:21219797-21222137:-
Coord C1 exon
chr23:21222012-21222137
Coord A exon
chr23:21219929-21222011
Coord C2 exon
chr23:21219797-21219928
Length
2083 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TATCATTTTTCACCTCTCAGAGT
3' ss Score
8.75
Exon sequences
Seq C1 exon
AGTGCCCCATGGGACAGTTTGGAGTTGGATGCACACAGTTTTGTGACTGTAAGGGAGCTCCATGTAACTCAGTGACCGGGAAATGCCACTGTCCTGCAGGGCAGACAGGACAACACTGTGAAAAAG
Seq A exon
GTAAGAAACAAATATACTTTTAAATCATATAAACCCACAATCACTATTTACACACATTTATAAGAAGCAAAATTGTTTTGCATTTAATGACTTTTCAATCTGTTTGCTTTTGGAGTGGATGAGGTAGTTTAGAGAGGATAAATTGCTGTGTTTTGGAGGCCTATTATTAGCCACATTTTGCTGAGCCAAAGATCACAGACATAACCACGGTAATATATCCCTCCTCACAGGCCAATCCATTAGAGAAGATCTCTCTTAAATTCACAAGCACATAATGCGACACAAGGAGTGAAGCCATGGAGCTAGTTAACAAGCCAGAGACGACTATTAGCTGTTAACGAAGAGTCAGAGGCTTCCAGCTGAGAGTGTGTGTGTTTAAATGTGAAGTGTGCTGTGAGCCTGTCAGGACTCCCATTTTGATATTCCTGGAAATATATGAGCACATTATATAGAGCCTTCAAATTCAGCTTTTACTTCTTATCATGATTATTTGGTTTGGTTTGTTTTTACACAATGTTTAAAATATTTGGCTAATAAATAAAATTTCAAATATAAAAATTTTTACTATTAATGTATTATTGTATTATTAAATGTAAATATTTCCCAGAGATGGGTTGCGGCTGGAAGGGCATCTGCTGCGTAAAAACTTGCTGGATAAGTTGGCGGTTCATTCCGCTGTGGCGACCCCGGATTAATAAAGGGACCAAGCCGACAAGAAAATGAATGAATGAATAAATGTAAATAATTTATTATTATTATTATTTTTTTTGATTGGGCAAATAAAAATATTTTACATCTGGGTCATTTGAAAAAAGCCTTTGCCTTTAGCCCTTTATGGGTCTAAAATTTCATTCATAATGGTTTTAAAAATGTCTTAAAAAGTCTTCAATTTAATTCTGAAACCTGCAGAAACCCTGAAGAATATAAGCTCATTATTGTCATATTTTAGTAAATCAAATTCGAGTAAAATTCAGAGTTAATTCGTAACAATGAGGAAAAAATATACAGTAAACATTCTGACTTACTCTGAAGTAAATTGTTGGAATGAAGTCAACTATGGGATATTAATTGATCATTGCTGTATGAGAATAGTTGAGTTTGACACACTGTCGCTATTGTTTTACATTTTTTTTATGTACATAGCAGTTTTTAGAGATGATCAGGCCATAATAAAAAATAAGGTACAATGTCATTTTTACAGTCATCGTCATATTTATTTTATTTTTATTTTTTTTGTTAATGGGCATTATTAATATCTAGAAATCATTTATGACAGAACATTGAACTATTCTTGTCAGTAGAAACTTCACAGCGGACACGAAATGTCTTTAGACGTTAATATTAGGTTAGATTTAATTCGTTAGTGTCTAAGGACAATGCTATTTAAAATGACGTTGATATTTGGTTGGTTTTGGGTTGTGTTGGAAAGTGGCCAAAATCCAACCTCGAGCCAACATCTTGAGCCAATGTCATAATGATGTCAAATACTGACATTTATTGGTCAGGTATGGCAACCAAAATCCAAAATCTGAAAGACGTCATAGTGGTAACGTCCACACAACGTCAAGCTGCACAACATCAATAGACGTTGATATTTTGTTGTTTTTAGGTTGCGTTGGAAGGTAACCAAAATGCAACCTCTGTCCGATGCTGGACATTGACATCGACCTGACATTAGGTTCTGACATGAACCCAATTTTCTTTTCATTTTTCAAACAAAATGCAATGTCCCATGACACTGGGGTAGAATGTCAATTAGATGTCATGTTGATGTCCTTTGCCTGCTGGGTTTAGTTTTTGTTAGCAGAACTTTTCCTGTCAGATTTCTGTGTATTCATCCTTTTAAAATAATAATTCTGATTTGCCAAAGCATTATTTATTTTTTAATTGGGAAAAAAGTTATTAAACTTAAAGATTGCTCACCAAAAAAAAAAAAACAACATTTTAACATCACTTGTAGGCTTATGTTTTCAGGGTTTGTTTTTACCTGCAGTGTTGTTTGGTTCCCAACAGTAAATGATGCCAGTTTTGCGTAGACTATTGTTTTAAGAATGAACTTACTCTATCATTTTTCACCTCTCAG
Seq C2 exon
AGTGTGAAGAGGGCCGTTGGGGTCTTGGCTGTGCAGAATCATGTCCTTCCTGTGACAATGGTGGAGTATGTGATAGACAAAACGGCACCTGTGTTTGTTCGCCGGGATTCATGGGAAATCTCTGTCAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079199:ENSDART00000143206:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF079748=EGF_2=WD(100=71.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]