GgaINT0134968 @ galGal4
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1020070-1020874:+
Coord C1 exon
chr21:1020070-1020195
Coord A exon
chr21:1020196-1020742
Coord C2 exon
chr21:1020743-1020874
Length
547 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTCTCTCTGATTGCTACAGCCT
3' ss Score
7.34
Exon sequences
Seq C1 exon
AGTGCCCAGCAGGGCGGTTCGGGGCCGGCTGCCTGCTGCTCTGCTCCTGCGGCGGGGCTCCCTGCGATGCAGTCAGCAGGAGGTGCGTGTGTGCACCAGGATGGACAGGGCACGACTGCGCCCAAG
Seq A exon
GTGAGTGCTTCTCGTGCCGTATGGCAGCAGCTGGAAGCCACTGACGGTGTGTGGATGTCCTGCTATGATAGTTCCACGTACAGAGAGCTGGCCCTGTCCCCAGCCCTGCAGCATCTCAGCTGCCCTGCTCAGCCCTCAGCAGTCTGCGTCCCTCGCACAGCTCCTGCAGGGTGACGGTGGCTGCCAGGTTAGGACGCTTTGCCAGAGCACTGCTCCCCAGCAGCAGATGTGAATCTCAAGTTGACACGAGGGCCCCGGCAGGCTAGCACTTACTGAGGGATGTTTATAAAACAAACACGGTGATGTTGTCCTTACTGCTAGCCGTGTGTTCCCAAACAGAAGCATACAAACCAGACAGGGAATCCACTACCAAGAAATTAGGCATCCCACCTTGCCCTTTTGGTTGCTAGCTCTCTGTACAGGGGTCTTGCAGCCCCTTCTCCCTGTCCGAGGGCAATGAGGAACGAGCCTAGCTGATAGCCCTCACCCCGCTCTGTGCTGCTTACCAAAGGCATTGAGCTGCCCTATTTCTCTCTGATTGCTACAG
Seq C2 exon
CCTGCCCAGAGGGTCGCTGGGGCCTCGGCTGCCAGGAGCTGTGTCCTGAGTGTGCCAACAACGGCAGCTGTGACCCCGCCACGGGAGCGTGCGTGTGCCCACCGGGCTTCACTGGCAGCCGCTGCCAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=30.2)
A:
NA
C2:
PF126612=hEGF=WD(100=28.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTGCTGCTCTGCTC
R:
CAGCGGCTGCCAGTGAAG
Band lengths:
222-769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]