RnoINT0087531 @ rn6
Intron Retention
Gene
ENSRNOG00000012094 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:RGD Symbol;Acc:68380]
Coordinates
chr6:108529683-108530287:-
Coord C1 exon
chr6:108530123-108530287
Coord A exon
chr6:108529899-108530122
Coord C2 exon
chr6:108529683-108529898
Length
224 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TCTTCTATTGGGTTTTTTAGAAG
3' ss Score
6.81
Exon sequences
Seq C1 exon
CGGACAAGGCTGTCTCCATGAAACAGGGACTCTGTTACCGGTCACTGGTGTCTGGCACCTGCACCCTGCCTTTGGTACAACGGATCACCAAGCAGATATGCTGTTGCAGCCGTGTGGGCAAAGCCTGGGGCAGCAAATGTGAACACTGCCCCCTGCCTGGCACAG
Seq A exon
GTAACCACACCCTGAGCCCAGCCCTGACCATCAGGATACATCCTCAAAGTCAGCGGCTTCTTCCCCAGCCTGGGTCGGTCCCTTCAAGCGGGAATTCAGTCTGTATTCCAGACCCAGGACTCTCTCTGCAGCCACAATTGTCTCTTCCCCTTGAGGGAAGGAAGGGGGCTCTGGTTTCTTACAGGAAGGGCATGGCTCAGTTAATCTTCTATTGGGTTTTTTAG
Seq C2 exon
AAGCCTTCAGGGAGATCTGCCCTGCTGGCCATGGCTACGCCTACTCAAGCTCAGACATCCGCCTGTCTATGAGGAAAGCTGAGGAAGAGGAACTGGCTAGCCCCGTAAGGGAACAGAGACAGCAGAGCAGTGGACCCCCACCTGGGGCAGCAGAAAGGCAGCCACTCCGGGCAGCCACTGCCACCTGGATTGAGGCTGAGACCCTCCCTGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012094:ENSRNOT00000031331:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.699
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(86.0=66.1)
A:
NA
C2:
PF0068312=TB=PD(11.6=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACAACGGATCACCAAGCA
R:
GAGGGTCTCAGCCTCAATCCA
Band lengths:
298-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]