RnoINT0090109 @ rn6
Intron Retention
Gene
ENSRNOG00000027596 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:RGD Symbol;Acc:1562961]
Coordinates
chr3:33465220-33467909:+
Coord C1 exon
chr3:33465220-33465546
Coord A exon
chr3:33465547-33467688
Coord C2 exon
chr3:33467689-33467909
Length
2142 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
TTTGTTTTTCAAAACTGTAGGCG
3' ss Score
6.84
Exon sequences
Seq C1 exon
GTGGTTCAAGCCTGCCGTCCTCCATAGCTATAGCTGGCAGCAGCCACCCTGCCATCACAAAGACAACATCTGTTCTCCAAGATGGTGTCATAGTCACCACCGCAGCCGGAAACCCACTGCAGAGTCAGCTGCCCATTGGGAGTGACTTTCCTTTTGTTGGCCAAGAGCATGCCCTTCATTTTCCATCCAACAGCACTTCAAACAACCATCTTCCACACCCCTTGAACCCCAGCCTCCTCAGTTCTCTACCTATCTCTTTGCCAGTGAATCAACAGCATCTCCTAAACCAGAATCTATTAAATATCCTCCAGCCTTCAGCAGGAGAAG
Seq A exon
GCAAGTCTGAGATCAACCTCCACCCTTTAGGTTTTCTCAACCCGAATGTAAACGCTGCTTTAGCTTTTCTCTCCGGTGACGTGGATGGGCAGGTATTACAGCCTGTTCACTTTCAGCTTTTAGCAGCCCTGCTTCAGAACCAAGCCCGAGCAGCTGCCATGCTTCCCCTGCCGTCTTTCAATCTGACCATCTCAGATCTTTTGCAACAGCAAAATACCCCTTTACCCTTATTAACACAGATGACAGCCCCACCAGACCGTTTGCCAAGCAATCAGTCAGACAACAGCCGAGCTGATACCCTTTTAGGCAGCCCCCTGGGAAACCCCTTAACAGGCAGTGACACTACTTTTAACCCCCTGCTCCTCCCAGCTGTCACTGGGGCCTCAGGATTAATGGCCTTGAATCCCCAGCTGTTGGGAGGTGTCCTGAACTCGGCATCGGCCAACACCGCTATTCATCCAGAGGTTTCCATAGCAACCTCCTCCCAGGCAACCACTACCACAACCACTACATCATCAGCAGTGGCAGCACTGACTGTCTCAACACTTGGTGGGACAGCAGTGGTGTCAATGGCAGAAACATTGCTGAATATATCTAATAATGCTGGGAATCCACCTGGTCCAGCTAAACTCAACAGTAACTCTGTGGTGCCACAGCTACTTAACCCTCTACTGGGGACAGGTCTGCTTGGTAAGTTCAATTTTTTTCACAAATTTTTTTTTCAAGAAACGTTTTTCTAATTCTCTATTCTTCTTTTTAAAACTACATTTTGTCACACTATTTTTTAAATGTCTTCATTATTATGTCACAGCTGATTTAAAGAATTAACTATAACAACACCCACACAGAACCATAGCTAAACAAACATTGCAATGGCTTTTTCCTTTTCTCAGATTCTAGCATTATTAAATACCACTGTGATCTGCTCTCTCTTGTCTTCTGATACTGATGCCACCTAACCTAACCTACCTATCATTCTCTTCAGCCAAGTACAGTCTGCATCTTCTAAAGAGCCTTCGTTCCTATTTTAGTTGGTGTGGCATCACAGGGTTGGTATGAGCAGCTGCACTAGGATGGGAACAGTCTGAGGAAGTGAACCCTGAGAAGCAAAACAAAAATGACCAAATACTCCAAGTGAGGTTTTCCCCAAGACCAAGGAAAATGTCCCTCTAAATAATGCTAGGTTTCCTCAGAATTATCATTGTTATAATTATGTATTTGTCCATAAAAAAAATCCTTTGCATAGGTTAGCTTATCAGAAAAAAGTTGAAAATAATGCCAAGTATTTATAATGGTGGGTACAGGTAACAACAGGGGAAGGAGAGAAAGTGCCCAAGAAACCCAGAAAGAGATAGAAGTGTACATGATGTTGTCAAGAGCATCCTGATATGCTATAAAACTCATGGGCAATACTGTATAGTACAGTACAATTAGTTTTGTCTAAACCTAAAATGGTTATAGTTAATACAAAAATCATAAATATACAGATTCGTTACAGAACTGTTCTCAAAAGATTTAAACAATTTAAAACAATTCTAAAATTTAACTATGTATCAGTTATTAATGCTATCCATTGATGTCATTGATTTTAAAATCTTTATAAATCTTTTATAACTATCACAGGGAATTCTCTTTTATTGTTGGGTTTACAGTTTTAATTTTAGCTAACTACCATTTTATTGCAAAACAAAATGCATATTTCAAAACTAAAAGTTAACTTAATTGGTGGTATTTATTGATGATTATGACTTAAAACTGAATTTTTATAAATGAGACTATATTATACCCACTCTTTCTCTTCATCTGTTCAACTACTTACTGCTAAGTAATTGCTATGGAAAATTTTCAACCTTTAATTGTAGGTGTTCTAATAAACATAGACATAGGGACACTTAGCTCTGAAGTTTAACACTAATGACTAAACCATCTTGATGGAATATAAAATAAAAGGCTAATCATACAGATAAAACTAAATGTTAAAGGTATCCTTTGCTTAGAGCCAAGTAAGGCTGATCAAAATGACCACTTTTCCCCTGAAGCTCAGCTGTCAGTTTTTGTTTGAGGAATTCTCAGGTGCAGAGACAACCATGTTAGTTCTCTGAAGAAGCACACTGACTTACACTTTGTTTTTCAAAACTGTAG
Seq C2 exon
GCGATATGTCATCCATAAACAGTTCTCTGAATAACCATCAACTGACTCACCTACAGTCACTGCTAAACAGCAGTCAGATGTTTCCTCCGAGTCAGCAGCAGCCGCCGCCGCAGCCGCACCTTCTCCAGGGACAGCAGAATCTCCAGGCCTTCCAAGGACAACCCACAGTCCTTTGCCCAGCTAACAATAACCCCATGGCATGTCTGTTTCAGAACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027596:ENSRNOT00000034632:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.344 A=NA C2=0.598
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]