RnoINT0091120 @ rn6
Intron Retention
Gene
ENSRNOG00000011315 | Med16
Description
mediator complex subunit 16 [Source:RGD Symbol;Acc:1308001]
Coordinates
chr7:12624605-12627274:+
Coord C1 exon
chr7:12624605-12624710
Coord A exon
chr7:12624711-12627118
Coord C2 exon
chr7:12627119-12627274
Length
2408 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TCCTGTCCCCAACTGTTCAGTTG
3' ss Score
5.44
Exon sequences
Seq C1 exon
GTGCTCCTGTGTGCATCCAGCCAGACCAGCAGCCTAGTGGAGTGCTGGTCCCTTCGGAAAGAGGGCCTTCCTGTGAACAACATCTTCCAGCAGATCTCGCCTGTGG
Seq A exon
GTGAGTCGTTCAGGGTTCCCTCCTGAGGGAAGCTCAGGGCTTTACTCATGGCTATTGGGGTTCAGACAGGGTCTCATTCTGTGTCCCTGGCTGGCCTTGAATGCACAGAACTCCACCTGCCTCTGCGATGAGAATTCTGGGATTTGGGATTCTTTAAAAACACAAACACGGAACTGTTATCTTGTTGTAAGCCCAGGAGTGAGATGTGGGGCTGCTTCAGATGTCCACAGCAGCTGACTATGATTTATGCTGACTATGATATGCTCTAGCAGAGGCGTGGTTTTGTTAGCTGCAGGTAATTTCTAAGATTGGGTGACATTTGGAATTCTGGGAACTTTTCAGAGGGTGCATACATGCCAGGGCTCTGAGAGCTGGGGTTGGTTGTGGTTTGTTAGCAGTTGTGCTCAAAGAAGAAACAAGAAAGGAAAGAAATTCCGTTCAAGGCTCTCTTTCTCTCTCACCTCTCTCGTTTCTCTCCTATCTAGTGATAGGACTGAAATGGGAGTGGGGGTGGCAAAAAGAAGAACCCACAAAGTAGCAAAGGCTGGCTACATGCCTCTGCCTCCTGAGCCCTAGTATTAAAGGTGTGGCCTGTTAATTTACCTTCCACAGTCCCGGGGGCTGTTGGCTTCTTGCCTAGAGTAGGAAACTAAGGCTCCAGAGCCCTGGTAAGGACAGCCTGGGAATGAACACACACTACACACACACACACACACACACACACACACACACACACACTACACACACACACTCATACACACACACTACACACACACACACTCATACACTACACACACACTACACTCACACACTCACACACTACACACACACACACTCATACACTACACACACACCATACACACACCACACACACACACTCATACACTACACACACACCATACACACACACACTCACACACTACCTACACACACACACTCACACACTACACACACACCACACACTACACATACACACACACACACACACACACACACACACACACACAATGCATAGGCCCTGGGGCAGGGGGCCAGCAACCAAGGGCTGAGCCTTGGAGGGGCACCCACAACTAAGGGAGGCATTTTACTTTGAAAGCCATGGAATCATCTAGAAATCCAGGTCAGAGAGAAGGCTGGAGTTGAGTGGAGTGGAGCATCTTTACCAAGACCACGCAGGACAGCACTCCACAGGACACTTGCTTACAAATGGTGACTGCCCAGGGGATAGCTACTGAGGCTGCCCCGCAGTGCCCTGGCTCAGCCCTGCATAACCTTCCCCACAATACAGAAAGAAGTGAGGCTGGAGGGAGGGTGCGGACCCTGTTGCTGTGGAGATTGCTAGAGGACCTAAGTGGCCTCAAGAGGCCCGTGCTGCAGTTACAGTAAACTGCCCTTTGTGGCCAGCAAGTAATTAAATGTGAATAGCATCCCCGCTGTGTCTCCTGCAGATGGCTGTGAGTCACCAGACAATCTGGGCTCACTGGTGATAGTGGGCAGCCCCACACCAACCCCCTACACACACACACACACACACACACACACACACACACACACACACACACACACACGTGCGCGCGCACCTCCCACAGATGCCCAGTGGGTGGTGCTTGGCAGCCATGGCTACCCAAGCTGAGGTGTGACCATGGTGACAAGCTGGATGTGGTCAAGCCAGGGGTGTGGCTAAGATGCCCTGGGCACCAGCCTGGCTGCCATTGGCCCCTGACTTCTGTGTTCCCTTTGTTTGTTCATTCCTTTGAGTTTTGAAAAAAGTCTTGAACTCTAGCCCACCCTCTCTGACATCAACTCTGAGCCATCCTCCTGCCTCTGCCTCTGGTAAGCTGGCATGACAGGTGTGCACCTCTCGCCCACTGCTCTCTGTGTCCCTTGTGAGAGAGCAGCCTCCGTGCAAGGAAGCACTGACTGCTCTAAACACTCTAGCCTCAGTTTCCCCTTGAGGGTTTTACTTGCTGGGGCTCCCTGTGGGGTCAGGACCAGTTTCAAAGATGGGGACTGAATAGATAACCCACCTCCTCATGCAGGCTGGGCAGGAAGGTTTTTTTTTTTTTTTTTTTTTCTTTTCTTTTTTTTCCAGAGCTGGGGACTGACCCCAGGGCTTTGCGCTTGCTAGGCAAGCGTTCTACCACTGAGCTAAATCCCCAACCCCTGGGCAGGAAGCAGGAAGGTTTAAGGCTAGCCTGGGCTACATAGAGAGCCAGCAGGCCTCTGAGATCCTGTTTCAAATAGGAAAGAGAAACGCCAAGACTGGGTCCTACTGGCTAAGGGAGGAGTGCTTGCTGCCCAGAGTCCTCTTCCTGAATTAGGACGGGTGGCCCTGCTTCCCTGAGGTAGAGCTCACCTTTCTGTTACACCCTCCCACACCTCTCCTTTTCCTGTCCCCAACTGTTCAG
Seq C2 exon
TTGGTGACAAACAGCCCATGATCCTCAAGTGGCGGATCCTGTCAGCCACCAATGACCTGGACCGTGTATCAGCTGTGGCACTGCCGAAACTGCCCATCTCACTCACCAACACTGACCTCAAGGTGGCCAGTGACACCCAGTTCTATCCAGGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011315:ENSRNOT00000015257:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(28.2=100)
A:
NA
C2:
PF116353=Med16=PD(36.3=84.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]