BtaINT0091457 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047217 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr7:45043608-45045578:-
Coord C1 exon
chr7:45045473-45045578
Coord A exon
chr7:45043764-45045472
Coord C2 exon
chr7:45043608-45043763
Length
1709 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCTCCCACACCCCCTTTCAGTTG
3' ss Score
7.53
Exon sequences
Seq C1 exon
GTACTGCTGTGTGCATCCAGCCAGACGAGCAGTGTGGTGGAGTGTTGGTCGCTGCGCAAGGAGGGACTTCCTGTGAACAATATCTTCCAGCAGCTCTCTCCGGCTG
Seq A exon
GTGAGTCGCCCAGGTGGCCAGGCACACTCAGACTACCCTGCGTGCAGCGAGGCGGCACCATGGTGGCCTGAGTTTGCTAGAACGTGCCCACCTCTCCCTCCCTCTCTGACCTTGCACCCACATGGATCCCCACGTCCCCGCCAGAGGGGCCCGCTTCCTGATACCTATGTGGCTGAGATGCCGGGGGTGAACCGCGGCCACATAGCCCGGGGCGTTCCTGCTGCCAGTAGTGCTCATGGCCCTGGAGTGACTGGCCTGAGTCAAGAGGCCCCTGAGGTCCATCCACCCGCAGGTGGGTTACATACGCTGCTCAACACAGTCCCAGAGGAGTTGTGTGAGGGTGGTCCGCTGCACCTCCTGAGTGGGGTCCTGGCCCTTCCCGAGTCCCACGCTGGCCCTGCTCCCCACCTGCTGTGCGGTCCCACCCTGGGACCTTATCACAGTAGGACCAGACTTCACTCAGAAGGGCCTCCCGTCCTGGTGGAGCCTCTTCCCGAGGCAGGCATCCAGGTGCTCAAGGGTCTCTGCTGAGTTCACCTGCTGCCCCCACACCCCATCCCTTGTCCCAGCCTCACGGCCCTGTGGGCTCTTAGACCTGCCTCTCCTGCCCCTTCCTCCTAACCTTTGCCCACACTGGTCTCCCTCGGGCCCCACCCTACCAGCTACTGTCCAGCCCGCAGTAGAGGCGGTGGCCTGACTTGGGTGGATAGTGGGTCCAGGTAGACTCAGGCAAGCTGTTCAGCCTCTGACAGCAGCCACTGTCCTCTGTGACCTAGAAACGGCCAAGGCCGTTAGGAAGCCAGTTTGGGCAGCTGGTGCGGGCCTGGCCTGAACGTGCTCCCTCTCTAGGGATAGCCTTGGCTGTCACCATGACAGCTCTGCTCAGTGCTGCCCCTCTCTGGGCCTCTCTCTCCCTGTGGGATGACATTTTCCAGGAGACTCCTCTTGCTGAGACGTCTGGGGCAGAGCTCTCAGGACAGGTGGGCGCAGAGGTGTGTTATCACAGCCAGCCTCAAACTCTGTTTCAGAAACAGAGCTGGACACTCCTGGGTCGGGCCACCTCACTGCTCCTGGATGCTCCTAGGTTGGGCCACCTCACTGCTCCGGCCTGCTTCCCTAAGTCTGCCGGCCCCCTGGGGCAGCTGGAGTGCTGGCCACCAGCTGGGTGCCTGGGCTTGTCTCAGCGTCACCTTGGTGTCTGGGCACCTCTGCCCACAGCACGCAGAGACCAAGCCCAGATGGATGGGAACCACCCCGCCTCTTGCTGGGGGGCTCCATTGTGGCACCGAGGGTGTGGGTGCCAGGAGGGGCCTGTCTGTCCCTCTCCTGAGGGAGCTGGGGTCCATCCAGGACCTCTTGGACCACAGGGACAGAGAACCCCGTGCACACCAGTCAAGTCCACAGGAGAATTTTGGGGTTTGTGTGGCAGCAAGGTCTGGGATGGGTTCCCCTCCTCGGCACGTTGGCTCCTTCGAGGGGACAAGGTGGCCACCCCTGCCCCCTGACAGCTGCTTGCCCAGGCAGACACCTTCTCCCGTCGCTGTGAAGGGCCCAGAACCGGGCCCTGTGGGGGACCCCCGCCCCCTTCCCTGCTCCTGTGAGTTGGCTGGGAGCCCCAGGAGGGGAAGGGCGCTGGGTCCAGTCCACCCTTGTTGCGTTTCAGTCTCGTCTTCGTTTTGTTGCCCCTTGTCTCCCACACCCCCTTTCAG
Seq C2 exon
TTGGTGACAAACAACCCACAATTCTCAAATGGCGGATTCTGTCAGCCACCAATGACCTGGACCGTGTGTCTGCTGTGGCACTGCCCAAGCTGCCCATCTCACTCACCAACACTGACCTGAAGGTGGCCAGTGACACCCAGTTCTACCCCGGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047217:ENSBTAT00000064681:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(4.9=100)
A:
NA
C2:
PF116353=Med16=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGCATCCAGCCAGAC
R:
GAGGCCGGGGTAGAACTGG
Band lengths:
255-1964
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]