BtaEX0021847 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047217 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr7:45043157-45045578:-
Coord C1 exon
chr7:45045473-45045578
Coord A exon
chr7:45043608-45043763
Coord C2 exon
chr7:45043157-45043368
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCTCCCACACCCCCTTTCAGTTG
3' ss Score
7.53
5' ss Seq
TCGGTACAG
5' ss Score
3.7
Exon sequences
Seq C1 exon
GTACTGCTGTGTGCATCCAGCCAGACGAGCAGTGTGGTGGAGTGTTGGTCGCTGCGCAAGGAGGGACTTCCTGTGAACAATATCTTCCAGCAGCTCTCTCCGGCTG
Seq A exon
TTGGTGACAAACAACCCACAATTCTCAAATGGCGGATTCTGTCAGCCACCAATGACCTGGACCGTGTGTCTGCTGTGGCACTGCCCAAGCTGCCCATCTCACTCACCAACACTGACCTGAAGGTGGCCAGTGACACCCAGTTCTACCCCGGCCTCG
Seq C2 exon
GGCTGGCCCTGGCCTTCCACGACGGCAGTGTCCACATCGTGCACCGGCTCTCACTGCAGACCATGGCCATCTTCTACAGCTCTGCCGCCCCGCGCCCCATAGACGAGCCAGCTCTCAAGCGCCCCCGGACCACAGGCCCCGCCGTCCACTTCAAGGCCATGCAACTCTCCTGGACCTCCCTGGCCCTCGTGGGCATTGACAACCACGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047217-'13-11,'13-10,16-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(4.9=100)
A:
PF116353=Med16=FE(7.3=100)
C2:
PF116353=Med16=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTGGTGGAGTGTTGGTC
R:
GGAGAGTTGCATGGCCTTGAA
Band lengths:
247-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development