HsaEX0038605 @ hg19
Exon Skipping
Gene
ENSG00000175221 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:17556]
Coordinates
chr19:879937-885008:-
Coord C1 exon
chr19:884903-885008
Coord A exon
chr19:881559-881714
Coord C2 exon
chr19:879937-880148
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCCTGCCCCTGATTTTTCAGTTG
3' ss Score
9.36
5' ss Seq
TCGGTACGG
5' ss Score
8.77
Exon sequences
Seq C1 exon
GTGCTTTTGTGCGCGTCCAGCCAGACCAGCAGCATCGTGGAGTGCTGGTCCCTGCGCAAGGAGGGACTCCCCGTGAACAACATCTTCCAGCAGATCTCCCCCGTGG
Seq A exon
TTGGCGACAAACAGCCCACAATTCTCAAATGGCGGATCCTATCGGCCACCAACGATCTGGACCGTGTGTCGGCCGTGGCGCTGCCCAAGCTGCCCATCTCGCTCACCAACACCGACCTCAAGGTGGCCAGCGACACACAGTTCTACCCTGGCCTCG
Seq C2 exon
GGCTGGCCCTGGCCTTCCACGACGGCAGCGTCCACATCGTGCACCGGCTCTCACTGCAGACCATGGCCGTCTTCTACAGCTCCGCGGCCCCGAGGCCTGTGGATGAGCCGGCCATGAAGCGCCCCCGCACCGCGGGCCCCGCCGTCCACTTAAAGGCTATGCAGCTATCGTGGACGTCACTGGCCCTGGTGGGGATTGACAGCCACGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175221_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.127
Domain overlap (PFAM):
C1:
PF116353=Med16=PD(3.0=2.8),PF116353=Med16=FE(11.1=100)
A:
PF116353=Med16=FE(16.5=100)
C2:
PF116353=Med16=FE(20.8=100),PF116353=Med16=PU(2.2=2.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTCCCCGTGAACAACATC
R:
CTTCCCGTGGCTGTCAATCC
Band lengths:
255-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)