DreEX0045792 @ danRer10
Exon Skipping
Gene
ENSDARG00000040779 | med16
Description
mediator complex subunit 16 [Source:ZFIN;Acc:ZDB-GENE-090306-4]
Coordinates
chr11:14061349-14070062:+
Coord C1 exon
chr11:14061349-14061454
Coord A exon
chr11:14061733-14061888
Coord C2 exon
chr11:14069856-14070062
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTTGCCATCTTCAGTAG
3' ss Score
6.62
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
GTCCTGCTCTGTGCATCTAGTCAGATGGGCAGCATTGTTGAGTGCTGGTCCTTGCGCAAGGAGGGTCTCCCTGTTAACAATATCTTTCAACACCGATCACCAGTGG
Seq A exon
TAGGTGAAAAGCAGCCAATGACTCTAAAGTGGCGAATCCTCTCAACGACCAATGATCTGGACAGAGTGTCTGCTGTCGCTCTGCCTAAACTTCCAATCTCCATCTCAAACACTGATCTCAAAGTTGCCTCTGATACTAAGTTCTTCCCAGGCCTCG
Seq C2 exon
TTGCACATGTTTCGAGTGTCCCCATCCATGGGCCAAATGTTGGACATGAACACCCTCCTGCGCCATTTACTGTTTCTCCTGGAGTACTGCATGGTAACAGGATATGACTGGTGGGACGTGCTGCTTCATGCACAGCCTGGCATGGTTCATAACCTTCTGGAGAAGCTTCATGAGGAATACATGAGACAAAACCAAGCACTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040779_MULTIEX1-5/6=4-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(4.9=100)
A:
PF116353=Med16=FE(7.2=100)
C2:
PF116353=Med16=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAGTCAGATGGGCAGCATTG
R:
TATGAACCATGCCAGGCTGTG
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]