MmuEX0028513 @ mm9
Exon Skipping
Gene
ENSMUSG00000013833 | Med16
Description
mediator complex subunit 16 [Source:MGI Symbol;Acc:MGI:2158394]
Coordinates
chr10:79361946-79365273:-
Coord C1 exon
chr10:79365168-79365273
Coord A exon
chr10:79362842-79362997
Coord C2 exon
chr10:79361946-79362154
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTCCCCAACTGTTTGTTCAGTTG
3' ss Score
5.04
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGCTCCTGTGTGCGTCCAGCCAGACCAGCAGCCTGGTGGAATGCTGGTCCCTTCGGAAAGAGGGCCTTCCTGTGAACAATATCTTCCAGCAGATCTCGCCTGTGG
Seq A exon
TTGGTGACAAACAGCCCATGATCCTCAAGTGGCGAATCCTGTCGGCCACCAATGACCTGGACCGTGTATCCGCGGTGGCACTGCCGAAACTGCCCATCTCACTCACCAACACTGACCTCAAGGTGGCCAGTGACACCCAGTTCTATCCAGGCCTTG
Seq C2 exon
GCTTAGCGCTGGCCTTCCAGGATGGCAGCGTGCACATGGTGCACCGACTGTCCCTGCAGACCATGGCGGTGTTCTACAGCTCAGCCCCGCGCTCGCTGGATGAGCCGGCCCTAAAGCGCCCACGCACCACATGCCCTGCCGTACACTTTAAAGCCATGCAGCTGTCCTGGACTTCGCTGGCCCTCGTGGGCATCGATAACCATGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013833_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(13.5=100)
A:
PF116353=Med16=PD(18.5=90.6)
C2:
PF116353=Med16=FE(9.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGCTGGTCCCTTCGGAAA
R:
GAAGTCCAGGACAGCTGCATG
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: