GgaEX1035761 @ galGal3
Exon Skipping
Gene
ENSGALG00000001978 | MED16
Description
NA
Coordinates
chr28:2326405-2327818:-
Coord C1 exon
chr28:2327713-2327818
Coord A exon
chr28:2326952-2327107
Coord C2 exon
chr28:2326405-2326616
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTTTATTTTTCCAAGTTG
3' ss Score
5.98
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTGTTGCTTTGTGCTTCCAACCAGAACAACAGCATTGTGGAGTGCTGGTCTCTGCGGAAAGAGGGCTTACCTGTCAACAACATCTTCCAGCAAATCTCTCCTGTGG
Seq A exon
TTGGAGACAAGCAGCCCATGATCCTGAAATGGCGAATTCTTTCTGCCACCAATGACTTGGATCGTGTCTCAGCTGTGGCTCTGCCCAAGCTGCCCATCTCCCTCACAAATACTGACCTGAAGGTGGCAAACGACACCAAATTCTTCCCTGGACTGG
Seq C2 exon
GTCTGGCATTGGCTTTTCATGATGGCAGTGTCCACATTGTTCATCGCCTGTCCCTGCAAATGATGGCTGTCTTCCATGGCTCTTCTTCCCAGCGCCCAGTGGATGAGCAGACTATCAAAAGGCAGCGAACTACTGGTCCCCTGGTTCACTTCAAAGCCATGCAGCTCTCCTGGACGTCTCTGGCCTTGGCTGGCATTGATAGTCATGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001978-'6-9,'6-7,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(4.9=100)
A:
PF116353=Med16=FE(7.3=100)
C2:
PF116353=Med16=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCATTGTGGAGTGCTGG
R:
AGCTGCATGGCTTTGAAGTGA
Band lengths:
245-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]