RnoEX0053636 @ rn6
Exon Skipping
Gene
ENSRNOG00000011315 | Med16
Description
mediator complex subunit 16 [Source:RGD Symbol;Acc:1308001]
Coordinates
chr7:12624605-12628136:+
Coord C1 exon
chr7:12624605-12624710
Coord A exon
chr7:12627119-12627274
Coord C2 exon
chr7:12627928-12628136
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCCTGTCCCCAACTGTTCAGTTG
3' ss Score
5.44
5' ss Seq
TTGGTACGT
5' ss Score
8.11
Exon sequences
Seq C1 exon
GTGCTCCTGTGTGCATCCAGCCAGACCAGCAGCCTAGTGGAGTGCTGGTCCCTTCGGAAAGAGGGCCTTCCTGTGAACAACATCTTCCAGCAGATCTCGCCTGTGG
Seq A exon
TTGGTGACAAACAGCCCATGATCCTCAAGTGGCGGATCCTGTCAGCCACCAATGACCTGGACCGTGTATCAGCTGTGGCACTGCCGAAACTGCCCATCTCACTCACCAACACTGACCTCAAGGTGGCCAGTGACACCCAGTTCTATCCAGGCCTTG
Seq C2 exon
GCTTGGCGCTGGCCTTCCAGGACGGCAGCGTGCACATGGTGCATCGGCTATCCCTTCAGACCATGGCTGTATTCTACAGCTCGGCCCCACGCTCTCTGGATGAGCCTGCCCTGAAGCGCCCACGCACCACAGGCCCCGCTGTACACTTCAAGGCCATGCAGCTGTCCTGGACTTCGCTGGCCCTGGTGGGCATCGATAACCACGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011315-'19-26,'19-25,23-26
Average complexity
S
Mappability confidence:
82%=71=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(28.2=100)
A:
PF116353=Med16=PD(36.3=84.9)
C2:
PF116353=Med16=FE(9.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCTTCCTGTGAACAACAT
R:
GTGGTTATCGATGCCCACCAG
Band lengths:
247-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]