RnoINT0091335 @ rn6
Intron Retention
Gene
ENSRNOG00000010634 | Megf11
Description
multiple EGF-like-domains 11 [Source:RGD Symbol;Acc:1582797]
Coordinates
chr8:70164017-70164623:+
Coord C1 exon
chr8:70164017-70164163
Coord A exon
chr8:70164164-70164488
Coord C2 exon
chr8:70164489-70164623
Length
325 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
3' ss Seq
CCCCTCTGTCACACCCTCAGTCT
3' ss Score
7.11
Exon sequences
Seq C1 exon
GCATCCGCTGTGATAGCACATGTCCTCCAGGTCGCTGGGGCCCCAACTGTTCAGTGTCCTGCAGCTGTGAAAACGGAGGATCCTGTTCCCCAGTGGACGGGAGCTGCGAGTGTGCCCCTGGCTTCCGAGGACCCTTGTGTCAGAGAA
Seq A exon
GTAAGGCTAGCCCCACACCCCCCACGGACTTCTGATTTCCCACTCACCCAGCCCCTCCCAGTCAGAAGTAGTGCTGGCCTCTGGAAGGCCAGGCCCCTCCACTCCATTTTGTCCCATGTTCTGACTGTTCTGTCCCTAAGTTCAATGTCTAGGTAAAATCAGGGCCATCCCACAGTTCTCTTCAAAAGGGATGGACCTCCAGGTGTGGGGACCCCAAACTTCCCCATTTTCAAGGAGCCTTTCTTTGCTGGAATGGGGGGACAGGTGGCTAGGCCAAGTTCCTAATGAGCTTCTGACCACCATCTCCCCTCTGTCACACCCTCAG
Seq C2 exon
TCTGCCCACCAGGATTCTACGGCCATGGCTGCGCCCAGCCTTGTCCTCTCTGCGTGCACAGCAGGGGGCCCTGCCATCACGTCAGTGGCATTTGTGAGTGCCTGCCAGGATTCTCTGGAGCCTTGTGCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010634:ENSRNOT00000037941:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(64.7=66.0)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(33.3=37.0),PF126612=hEGF=WD(100=28.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATAGCACATGTCCTCCAGGT
R:
CTTGGTTGCACAAGGCTCCAG
Band lengths:
272-597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]