RnoINT0092919 @ rn6
Intron Retention
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84939957-84944711:+
Coord C1 exon
chr17:84939957-84940529
Coord A exon
chr17:84940530-84944666
Coord C2 exon
chr17:84944667-84944711
Length
4137 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CCTTTCTTCCTTATCCACAGAAA
3' ss Score
11.07
Exon sequences
Seq C1 exon
GCAGTTTTTCAGGAACTCCAGGCAGTGTAAAGTCATCTTCTGGAAGTTCAGTGCAGTCTCCCCAGGATTTCCTCAGCTTCACTGACTCGGACCTGCGGAATGACAGTTACACTCACACGCAGCCGCCACCGTCAACCAAAGATGTACATAAAGGGGAGCCTGGCAGCCAGGATGCAGGGGTGAACAGCTTTAGCTCTCTAGTTGGTCACCCTGGGACCTCAGGTGCGACTTCACAGCCGAAAAGCTTTGACAGCTCTCCTGGGGAGTTGGGCAGCTCCAGCCTTCCTACAGCAGGGTATAAGCGGGCTCAGACTTCTGGGGTAGAAGAGGAGGAAGCCGTGAAGGAAAAGAAACGGAAAGGGAATAAACAAAGCAAGCATGGCCCTGGCCGACCCAAAGGAAACAAGAACCAAGAAAATGTTTCTCACCTCTCGGTTTCTTCTGCTTCACCGACATCATCCGTGGCATCGGCTGCGGGGAGTGTGACAAGCTGTAGCCTTCAGAAGTCCCCCACGCTGCTCAGGAATGGAAGTATGCAGAGTCTCAGCGTGGGCTCGTCCCCGCTTGGCTCAG
Seq A exon
GTAGGGCTGTGCCTTGCTGCCCTCTCTCACGACCTGTACCTGTCTGGAGAGCTGTTACATTCAATTACCCGCAACGCTTGTTCACCTTTATCTTTTTAAGTTTATTATCATTTGTTTTTAAAGACTAGAGCTCATTAAGTAGGCAAGGATCATTCTGTAGCCAAGGCTAGCCTGAGCCTCCTGGATCAGCCCCAGTGTGGGGAGTTGCAGTTACGTCGCCTGGGCACTTGGGAGGACATGGCATGCACTGTAGCTCAGCTGTGGAGGTGGAGGACCGCTCTTTCACCATGCCCGCCTCAGGTTGTCAACCTTCTGAGCCCTCTCACTGACCTTGGAGCTTTCAGTCCCTGATGGGAAAGGATCCTGCAGGCCCAGATACTATTTGGTGTTGACGTTTTTACCGTCACTCTCAGGTTGCTTAGTTGAATGTAGATAAACAGTGCACTAGCCCTCACCTGTGTCTTCGTCCCACCTGCATAGTGTAGATGACCAAACCAGGACTCACATTTTAGATAGGAACACGTCTGCACTCGCTTTTGGTGTTTAAAGCTCTTTTGCTAAACCTCTTTTTTTAGTTTTTACTTTCTTAGTAATTGTATATAAATAACGTGGATTTTTGGAGCCTTTTTTTTCATAACTGATAAATTTAGGATTTTATGTCAAGTTATATCTGAAATGATTTAAAATTTGTTTTAAATGTATTTAGTGGTTTTTTTTTTTATCTGAAATGAGAATTGATTTCATAGATTTGAAAGCTTGCTTTTATTTTTAATTTTGAAATGTTCCAGTCTTGCCTAGAGCTGACTGTCCAGCACCATCACATCTGACATTGGCTGTGGCTCAGTGGTCTGTGTCTTCTTGGTGCTGAGGTAGAGGTGTGCCCGTGTGTGGGTGGCACTGGCCTGCCTCTGTGTAGCCTGTAGTCGTGTTACAAGTCTTTTTAATTCTGAAAAAGACTGGAAGCGTGTATTCCATTCTCTTTAAAGACTCGGGTTCTGTGTTCTGGGTTATGCTTGCTTGTGTGTCTGTGCTCTGTGTTACTGCCTGATGCCCTTGGGGACCAAAAGTGTGCATAGGGTGCCGTGGGACTGGGGTTGGAGAAGGCTGCAGGATGCTGCACCTAAGTCAAGACTACAGGATCTCACTGAGGAGCTGTGCTTAGCTTAGAACTTGCTGTGTAGAACAGTCCAGCTTCAGAGCTAAGATGCTGGCTGGCCTCCGCCTGTGAGTGCTGTGACTAAAGACGTGCACCACCATGGCCTACCACAAGCTCTTGTGTTCATTTTTTTTTTTTTAAACATTTATTTATTCATACGTCATACAGCTTTCTGCCTGCATGTACGCCTGCAGGCCAGAAGAGGGCACCAGACCTGATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGTACTCAGGCCCTCTGGAAGAGCAGACAGTGCTCTTAACCTCTGAGCCGTCTCTCCAGTCCCTCTTTTTTTTTTTTTTTTTTTTTTAAAGATTTATTCATTTATTATATATAAGTACACTGTAGCTGTCTTCAGATTCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCACGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCTGTGTTTTTTAAGATTTATTTTTATTTTCATTTATGTGTATCTGTGATGTCACCTGTGTGGGTTCTTAGGGGTGTCAGAGAGGGCATTGGATCTCCTGGGGATGAGGCTAACATCTCTAATTGATAAATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGCGCGTGCGTGCACGCACATGCGGCATTGAACCCAGGTCCTCTTGAAAAGCAACAAATACTCTTATCTACCAAGCCCTCTCTCTACCACCAACCCTTAACAGTTTGAAGTTTCATTTGTCTGTTTTTAGTTTTCTTCTTGAATATAAAGTAAGCAGCTTTTAACACATCTTGACTGTAAACTTCACCCCTTTTGTGTAGCTGTGGATTTCTGATTGCTGAAGTAAGATTCAGCTGTGATACAACATGATCCATGATATCGTGGATAATGACAATGTTATGTATCCCAAGAGAAGGAAGACATGATATGGGATGAAGACATATGAAAATACTCATTATACTGTGTATTCTGCAGGAACAGTTTCCAGAAAGAAACACACACACACACACACACACACACACACACACACACACACACACACACGGATGTTATCTGATGTGTTGTGTTTCATTGAGTTGCCATTTTCATCCCCTTTGGGAGCAGTTTAATAAAGGGCTGTTGACCCTGTCCTGCAGTTGATAAGTGCCTGAGGGTGGCCTAAGGTCGGACAGCCTGAAGTTGTTTGTTTGTTTGTTTGTAATAGATCACATAGCACCCCCTGTAGGGCCTGTAGCGGAGCTGTTACATGGCCACATAAGCCTTGGTGTCTTGGTGTCTTGGACATGTTGGGTTGGGTGTTCTCGGTGTTCAGTACTTGTCTTTTGTAGGGTATTTTCCAGGATCCCTCACCCCTTCTCATTAGTTGCTAGTAGCACTCCCCCATAATAAATATGTCTCCAGACATTGTTAAAGTCCCCAGGAGGCCCAAATTGCCTCTGGTTGAGAACTACTGTTTCAGGAGGTGGGAAAAATAAATTACAGTGGGAACAAAGTTCATTAAAAAGATTTAAATATACTGAACATTTGAATAAATGTTTTTATTTATTTTTCCTTTGAGACTATAAGGGCCTAGCAATCAGCCTTAGCCTTTTGCCACAGAAAGCGAATTTAAATAAATTTACTTGTGAAAAATTGGGGTCATATAATTTTTAGCAAAAATTATAATTCAATGAGTACCTTGCTTAGAACATAAAGCTTAAATTTGTTTTTGTGATCCTCACTGAGTCCTGCAATTTTGTAACATAGAATTTGAATTTCAGAGTTACATTTGAGTGCTTCTTTAAAATGCACATCTTTAGATTAATGGAATTAAAAAATAACTAATTTATAGCTGTTAAGAGATTTATTTTTTAAAAAAACCTGTTATAGATTTAGAGAGATTTTAAACATGCAAAGTAATGTTCCTTTCAGAGAGCAGAATTTATAGTACATTAGTTGCAGTAAAAACCTTAATTCATATTTCTTTTACCTTGTTTTTATAATCATCCAGAGGGAATTCCCATTGGAAGATATTATAGATTTAAATCAGTAAAATTTTAATATGCAAATAGTTTAAAGTTATTAAAGTTTACTAAAGTTATAAAACAAACTTAAGTCATTTTACTCATTTCTAATACAAGTTTCATAACCAGAACAGAGTGTTTTCTTCTGAGAAGTTGGGGTGAAGAGTCTGTTGTCGAAGCTTGGTACATCGGCAGCTGCTGATGAGTGCTTGAAATGTTCAGGCCCTGGATTAAGCACTTAAGGGTTAAGCATTATTACTTACTGTCTACGAGAAGAAACTAAGACATACAAATATTACAGCTCTAAGTGCTGAAGCTACGTTCCTTATTTGAGAACAATTTTGTTATGAAATTCAACAGATAATAAAACTGTCAGTCATCTCTAACCAATGGAATGCATGAGCAAATTTAAGCAAATAATTTAACATTGTTCTGATATAAAAAAGCTAATTTTTCCTCTGGGTTAAATTTTAAATTTAGAAGTCATTTATTATCTGTAAGTTGTCCTTCTCCCTGATGAAGTGGGAAGAAGCCGGATATGATGGCATGTTCCCTTCGACCTGGGACTAGGCAGGCAGAGGCAGGTGGAGAACCTCTTGTGTGTTCAAGGCTAGCCTGGTCTACATAGGAAGTTGTAGGTCATCTAAGGGCCATACAGTTTAGACCCTGCCTTAAAAGTGTTGTAACCCTTCTCTTCCCATTCCCCCCTTCCCTTGTGTTGTCTTTTTTAATGACAGGTTGAGAAATTCGTAATTATGACATGAGTTCCACTTACCAATTCTTGATCTTAGAGCCTGAGCCATTGGAATTCTGTTTAGGACATTTCCCCCATTTTTCTGTCCTGTTTCTTTGACCTTAAGTTTATTGCAATTTCTTTGCTAATTTCCCTTTCTTCCTTATCCACAG
Seq C2 exon
AAATTTCCATGCAGTATCGACATGATGGAGCTTGTCCAACAACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249:ENSRNOT00000034157:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.988 A=NA C2=0.850
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]