RnoINT0095710 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214785639-214786102:+
Coord C1 exon
chr1:214785639-214785749
Coord A exon
chr1:214785750-214786032
Coord C2 exon
chr1:214786033-214786102
Length
283 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
ACTGTTCCACTGCATACCAGGTC
3' ss Score
6.72
Exon sequences
Seq C1 exon
AAATGTGCAGATAGCAGCTTCACTGTGCTGGTGGATCTTCGGAAGTGTGGAATGACGGACACCGAGAACTGCCTCAAAGCAGTGACGCTGAGCCTCAATAGCGGGGACATG
Seq A exon
GTGAGGACTGGAGCTCTGACTACCATCACACTCTGGGTTATGAAGAACAGAGGTAGGGAAGTATATAGAGTGGCAACCGGTTAAAGAGAGGCCATCACTCCCTCTCCAAGCCTGCAAGACAGGAGCAGCCACCACCTAGGGAGAGATTCTAGAACCTCCTGCGAGGGCAGGGCTGAGCTTCCTTTTTGGCTCTGTCACTGGATGGAGGGGGGATTCCGTCGCAATTCTTTCTGTAAGTGTCCGGATGGGCCCTGTGGGTACTAACTGTTCCACTGCATACCAG
Seq C2 exon
GTCGTCAGGATCCAGGTCAACGGTGCTGTGTTCCTGAACTCCATTTTCACTCAACTGCCCTTGTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(23.2=100)
A:
NA
C2:
PF0009420=VWD=FE(14.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCACTGTGCTGGTGGAT
R:
GCTGACAAGGGCAGTTGAGTG
Band lengths:
164-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]