RnoINT0095712 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214786429-214787098:+
Coord C1 exon
chr1:214786429-214786566
Coord A exon
chr1:214786567-214786933
Coord C2 exon
chr1:214786934-214787098
Length
367 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CTCCTGACCTTGGTCTCTAGGCC
3' ss Score
8.32
Exon sequences
Seq C1 exon
GCAACGTCACCATCTTCAGGCCATCATCCTTCTTCGTTATAGTACAGGTGGGCACGGGGCTGCAGCTGCAAGTGCAGCTGGTGCCCTTCATGCAGGTGTTTGTCAGGCTGGACCGCTCCTACCAAGGCCAGATGTGTG
Seq A exon
GTGAGTGAGGCACCAATGGGCTTGAACATAGGGTTGTGGGGGTGGGGCTGTTGGGGCCTTCACAACTCTAGGTTGTGAAGTGAGATCAAGTGTGAAAGATGGTTGGGCAGCATTGGCTCTATGGCTCGGTGGAAACCCCAGCACCACCCAGCATGTCTGACATCTAGTCAGTAACCTGTGGAGTAGCCTGGGAAGACAGCCTGCTGTGCTGCCCTGATTGGGCTAGCCCTGTTAGGAGATTGTCATAGGGGAGGTACTAGGCAGGGACTTTCTCCTCGGTCTTCTTTTAACAATGCTTAGATGGATGACAGCCTGGGGAGAGTGACCAGGTTGAATAAATCACTGACCTCCTGACCTTGGTCTCTAG
Seq C2 exon
GCCTGTGTGGAAACTTCAACCAGAACCAGGCCGATGACTTCACGGCCCTCAGTGGGGTGGTGGAGGGCACAGGGGCAGCCTTCTCCAACACCTGGAAGACTCAAGCCTCCTGCCCCAACTCCAAGAACACCTATGAAGACCCCTGCTCATACAGTGTGGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(29.7=100)
A:
NA
C2:
PF0009420=VWD=PD(12.3=33.9),PF087426=C8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGTCACCATCTTCAGGCC
R:
CGTTCTCCACACTGTATGAGCA
Band lengths:
302-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]