RnoINT0095726 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214795371-214795798:+
Coord C1 exon
chr1:214795371-214795499
Coord A exon
chr1:214795500-214795653
Coord C2 exon
chr1:214795654-214795798
Length
154 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ATAAACCCCACATGCTCTAGGCT
3' ss Score
4.07
Exon sequences
Seq C1 exon
CTCTTTTCTGTGACTACTACAACCCTCATGGGCAATGTGAGTGGCATTATCAGCCCTGTGGAGCCCCCTGTCTGAAGACCTGTCGGAATCCATCTGGACACTGCCTGGTTGACCTGCCAGGCCTAGAAG
Seq A exon
GTGAGGGTAGAACCTTTGGGCCCCGTAACCCATGCACGGTACCTTTAGGGCAGACCCAATGTACTGGGGGTTCTCTGCCACTGCTTGGAGGCTGGGCAAATGACTACATGCTTGAGAGGATGGGAAGCCAAATGATAAACCCCACATGCTCTAG
Seq C2 exon
GCTGCTACCCACAGTGTCCACCCAGCCAGCCCTTCTTCAATGAAGACCAGATGAAGTGTGTGGCCCAGTGTGGCTGCTATGATGATGACGGAAACTATCATGACATTGGCACACAGGTCCCTACAGCTGAGAACTGCCAGAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGCAATGTGAGTGGCATT
R:
ACTCTGGCAGTTCTCAGCTGT
Band lengths:
245-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]