RnoINT0095736 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214804392-214805108:+
Coord C1 exon
chr1:214804392-214804648
Coord A exon
chr1:214804649-214804921
Coord C2 exon
chr1:214804922-214805108
Length
273 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTCCCTCTGGACATCTCTAGATT
3' ss Score
6.74
Exon sequences
Seq C1 exon
GCTTCTGCAGTGGATGGGGGCACTCCCACTACCTGACATTCGATGGCACCTCCTATACTTTTGTGGACAACTGTACCTCAGTGCTCATGAGAGAGATCCACCCTCGCCATGGCAACCTGAGCATCCTTGCCCACAGCTACTACTGTGGGGCCACCACAAATGTCACCTTCTGTCCCCGCGCCCTCAGTGTGTACTACAACTCCATGGAGATTGTCCTCACCACCACCACCACCAACAGTGGGAAGGAAGAGAGCCTG
Seq A exon
GTGAGTTTTGTGATAGGTAGGGCCTCCATACCGCATAGCAAACATGGGGTCTAGATATGGGGCGGCATAGGCAGGGATGAAAAGCCCTGAGGACTGAGAACATTCTCCCCTCTGCAGAAATGGCATGTAGGAGTTGGTCTAGGCAAAGAAATAACTCTTAGCTCTAGACTGGGGAGACATTAGAAAGGTTCCCGGTGTTTGGGAGGGAGAATGCCCGAAGAGTGTGCTGCCTACCTGGCCCTCTGATCATTGTTTCCCTCTGGACATCTCTAG
Seq C2 exon
ATTATATGGGACCAGATGTGGATAAGGTCGGGCTTCAGTAAGAATGGCGTGACCGTATCTTTGAGTGGGGCCACCACAATGAGTGTCAACATTTCCACCATTGGCGCCAGCATCACCTTTGATGGAAACATCTTCCAGATATGGTTGCCCTATAGATACTTCAGCAACAACACTGAGGGCCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.9=96.5)
A:
NA
C2:
PF0009420=VWD=FE(38.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACATTCGATGGCACCTCC
R:
GTGGCCCCACTCAAAGATACG
Band lengths:
299-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]