RnoINT0095738 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214805207-214805702:+
Coord C1 exon
chr1:214805207-214805432
Coord A exon
chr1:214805433-214805523
Coord C2 exon
chr1:214805524-214805702
Length
91 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CTGACCCCTCACTATCATAGGGT
3' ss Score
7.75
Exon sequences
Seq C1 exon
GTACCTGCACAAACAGTCAGACAGACGACTGCCGCCGGCCTGATGGCACCATAGCTTCCGACTGCCAGGACATGGCCAAAGACTGGCTGGTGCCGGGGAACAACAACAGCGACTGCTTAGCTCAACCCAGCCCTTCCCCCAGCACCACTTCCCAGCCCCCAATGTCCAGCACACTGACCTCCACCACATGCCCCTCTGCGCCTCTCTGTGAGCTGATGTTGAGCCA
Seq A exon
GTGAGTCGGCCTTTGGGGTGGTGGGCCTGGGCAGTAGTTCCTTGGCCAGCCTCCCTGTTGAGCTCCCAGTCCTGACCCCTCACTATCATAG
Seq C2 exon
GGTCTTTGCCGAGTGCCACAAGTTCATCCCTCCAGACGCCTTCTTCAGAACCTGTGTCAGTGACCACTGCAATGGCAATTTTAGTAAAACGCTCTGTCAGAGCCTGGAGGTCTACGCAGCGCTCTGCCGGATCCAGGGTGTATGTACCGACTGGCGCAATGCCACAGGAGGGCTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(9.8=21.1),PF087426=C8=PU(17.6=17.1)
A:
NA
C2:
PF087426=C8=FE(81.1=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTGCTTAGCTCAACCCAG
R:
GGTTCTGAAGAAGGCGTCTGG
Band lengths:
169-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]