RnoINT0096277 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53714250-53715911:+
Coord C1 exon
chr10:53714250-53714393
Coord A exon
chr10:53714394-53715754
Coord C2 exon
chr10:53715755-53715911
Length
1361 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGT
5' ss Score
7.77
3' ss Seq
TTCTCTCTTTCCTTATGCAGACC
3' ss Score
10.78
Exon sequences
Seq C1 exon
ACCCTGACGGTGAAAGAAGACCAGATCTTCCCCATGAACCCTCCCAAGTACGACAAGATCGAGGACATGGCCATGATGACCCACCTCCACGAGCCCGCTGTGCTGTACAACCTCAAAGAGCGTTACGCAGCCTGGATGATCTAC
Seq A exon
GTGAGTGACCCACATTAGGGGTCTTTAATGTCATCACCATGTGTCCTAAAAGCCAAGGCACAAATGTGTCCTAAGTGTCTCTCAGATACCAGAAGTCACTAGCAGAATTACTAGTTATTAAAAGGTTCATTATTGAGACTATAAGGCACATTTCCAAAGTGACACCTTGTCTTCTCTCCCAAGGGGAGACCACTGTCCTGGCCACTGACTTTATCACATATATGCTGATTAAACATGCTAATGCTTTCCCCTCTCTTCCCCACCTCTCCCGTTCTTCCCCTCCCCTCCCTTCCTTTCCCTTCTCTGTCAATTGCTGTTGCAGAACCATCTCAATGAAGAACAGATAAACACTCTGAAATATTTTAAAATGGGAATTTTTAGGGGTTAAATTTCATTTTAGGGATTAACTCTCCACACACAACCATACCAGGTTCTCTGTGTTTTGGTTTCTTTCATCTGTGGAATTTTCCAGCATCCCCAGGCAGCCTTGAGTATTCTGCCCCGCCTTTCCCATTCCTGCATTCACACTGACTACGTTTTTCCTGGTCATTCATTAACTTACCCATCTACTGTGTTGATGGAATTTCTCAAAAGATGCTATCTTATTTATGTTTTAGTCTGACACATACAGGGTCTTAGAATATAATATAATATCCAATAAACATCTGAATGTATGGTATCTTATATTTGTAATTTTACACAGTTTAACCAGTACTGATATTCAGTTGGGTAACATCCACACAGGTAAATCAGATGTTTATGCTCTATAACGACTTTAATTGGTTAGTGACAGTCCTTAACCAGTTGACAGGCAATGTTTAAATTCCTGCATTTAATCATCATGCATTTATTTGTTCTTTGCCAGTGTATAACTAAAAAAATTTTTTTACAGTGCTTCCCAATGCTGCCATATCTACATACTGTCCCACTCACTTTTGATAGCCCCTTATCATGTTGTCTTAAAATATTCCAAAGTCCCCATCATTCTCTTATTGTTGAATACATTTATGTTCAAATTTATGTTCTTATAAATTCAAAGTGTTTCAATTCCACGAAGAAAATATATTCCTGTTTCTTTCAAACACCAAAAAGCAATCTCTCATAGTCCACACTTTAAAACAAATAGACATGGTGTTGGTGCTGCTACTGTGTGAAAATCATGACAAGACCAAGGGAAGCAGTAGGAACTCTGAACTGGTCATTGCCCTTAAAGATGTTGCTGTCTGCCAGCCAATCAGTTTCCAAGCTGATGCCTGGGAGAAATGTACTCACAAAAGTCCTTCTTTTTCTTAAAATCCAACTAAGTGAGTTGCGCAGACAAGAAGGACCTTTGGATAGTCATTCTCTCTTTCCTTATGCAG
Seq C2 exon
ACCTACTCGGGCCTCTTCTGTGTCACTGTCAACCCCTACAAGTGGCTGCCAGTGTACAACCCTGAGGTGGTGGCTGCCTACCGTGGCAAAAAGCGACAGGAGGCCCCGCCCCACATCTTCTCCATCTCTGACAATGCCTACCAGTTCATGCTAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(6.2=58.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGACGGTGAAAGAAGACC
R:
AGCATGAACTGGTAGGCATTGT
Band lengths:
295-1656
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]