RnoINT0096453 @ rn6
Intron Retention
Gene
ENSRNOG00000061038 | Myh15
Description
myosin, heavy chain 15 [Source:RGD Symbol;Acc:1565858]
Coordinates
chr11:54217522-54222809:-
Coord C1 exon
chr11:54222684-54222809
Coord A exon
chr11:54217693-54222683
Coord C2 exon
chr11:54217522-54217692
Length
4991 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CTTCTTTCCTCCCGTCTTAGGCA
3' ss Score
9.51
Exon sequences
Seq C1 exon
AACGCAAGCCTCCTCAGCCAGAAGAAGAAACTGGAGGCTGATGTTGCTCAGGCGCAGAAGGAAGCTGGGGAGATGCTTCAGGCTTGTCAGAAGGCAGAAGAAAAGGCCAAGAAGACAGCTGCTGAG
Seq A exon
GTGGGTCTGTTGACTGCCTGCCCACTTCTGGCCTCTGGAGTTCACTATAGCAACAAAACTCACTATAGCTCACTATGGCCCAAAGGCAGGGCCTGCTTCAGCCCAAATGGATTCTATTGATCCCCTATACAATCAGGAAGAAGTTAGCTGACCTTGCCCTTTCCCCATTAGCCAGAACATTTAGGCCAATTGACAGTTGTCTTCTAACCCACCTTGACAATGAGAAGGGATGGTTGAAAAGCTAAAAGCAAAATCCTGTGGGGAAAAAAAAGAGTCTTTCTTTTTAGGTTAGCTATTTTTCAATTGTGATTCAATATAGGCAGTGTTTAGAAATAATTCTTTCTGTACTTCCTTACAAATTTCCATTTCTCTTCAGTTATGTAATGGTCCGATGATTGATGATGATGGTGGTGGTGGTGATGATGATGACGATGATCTGAAAAGAGTGGTTAAGCCACTTACAGTTTACAATCCATACTCCTACTGGGGTAGCAAAATCAGACGGGAAAAGCAGTGGTCAGGGCTGGTGAACCATACTCCTTTGTGAACTGAAAGTTGGCGGTGGTGTTGCTTTTCCTTGATGGCACTAAGTGCAAGTGCTAGCTGCCAAACCCAACAAGAAAAACTCGTGCCCTCCAGTCCCTGCACTGTCTATGAGCAGATGCTATGCTTCTATTAAAACACATAGTAAATGAACAGTGCTATTGAGAAAAAGCTATTAATGGAGAAAAGGGAAGTTTGTGTATTCAGAGCCCAGGGCGGGAAGTTTCAGGGTTTATAAATGTATGTGAGCATGATTTCAGTCTCTGCTTAGCCTCTGGGGGCTTTTCTGGAGTCTATCAAATGTGCAGCTATATGCAGTGTTCTAACCCTGCTTTATTTTTATTTTATTTTATTTTTTAGTAACTTTTTTTCTGTCTTTATTAAATTGGGTATTCCTTGTTTACATTTCAAGTGTTACTCCCTTTCCTGGTTTCCAGGCCAACATCCCCCTAGCACCTCCCCCTCCCCTTCTATATAGATGTTCCATTCCTCATCCTCCCCCATTACTACCCTCCCCCGAACAATCCCGTTCACTGGGGGTCCAGCCTTGGCAGGACCAAGGGCTTGTCCTTCCACTGGTGCCCCTACTAGACTATTTATTGCTACCTATGGATTCATTCCTTTTGGAGTCCAGGGTCAGTCCATGTATAATCTTTGGGTAGTGGCTTAGTCCCTGGAAGCTCTGGTTGCTTGGCATTGTTGTTCATATGGGGTCTCAAGCCTCTTCAGCTCTTTCAGTCTTTTCTCTGATTCATTCTACAGGGGTCCCGTTCTCAGTTCAGTGGTTTGCTGCTGGCATTCACCTATGTATTTGCCATATTCTGGCAAGTGTCTCTCAGGAGAGATCTACATCCAGTTCCTGTCGGTCTGCACTTCTTTGCTTCATCCATCTTGTCTAATTGAGTGGCTGTATATGTATGGGCCACATGTGGGGGGGGGGCAGGCTCTGAATGGGCGTTCCTTCAGCCTCTGTTCTAAACTTTACCTCCCTATCCCCTCTTAAGGGTATTCTTGTTCCCCTTTTAAAGAAGGAGTGAAGCATCTGCATTTTGGTCATCCTTCTTGAGTTAGAACTATGCACCTAGGGTAATTCAAGCATTTGGGCTAATAGCCACTTATCAATGAGTGCATACCATGCGTGTTTTTCTGTGATTGGGTTACCTCACTCAGGAAGGTATTTTCCAGTTCCAGCCATTTGCCTATGAATTTCATAAAGTCATTGTTTTTGATAGCTGAGTAATATTCCATTGTGTAGAGGTACCACCTTTTCTGTATCCATTCCTCTGTTGAAGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCGATGAACATAGTGGAGCACGTGTCTTTTTTATATGTTGGGGCATCTTTTGGGTATATGCCCAAGAGAGGTATAGGTGGGTCTTCAGGTAGTTCAATGTCCAATTTTCTGAGGAACCTCCAGACTGATTTCCAGAATGGTTTTACCAGTCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCGCATCCTCGCCTTGCTGTCACCTGAGTTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGAAATCTCAGGGTTGTTTTGATTTGCATTTCCTTATGACTAAAGATGTTGAACATTTCTTTAGGTGTTTCTCAGCCATTTGGCATTCCTCAGCTGAGAATTCTTTGTTTAGCTCTGAATCCCACTTTTTAATAGGGTTATTTGTCTCCCTGCAGTCTAACTTCGTAAGTTCTTTGTATATTTTGGATATAAGCCCTTTATCCGTTGTAGGATTGGTAAAAATATTTTTCCATTCTGTTGGTTGCTGTTTTGTCCTAATGACAGCGTCTTTTACTTTACAAAAGCTTTGCAGTTTTCTGAGGTCCCATTTGTTGATTCTTGATCTTAGAGCATAAGCCATTGGTGTTTTGTTCAGGAAATTTTCTCCAGTGCCCATGTGTTCAATGCTCTTCCCCACTTTTTCTTCTATTAGTTTGATTGCATCTGGTTTGATGGGGAGTCCTTGATCCACTTGGACTTAAGCTTTGTATTTGTACAGCTAACCCTGCGGGAAGGTAATCCTCCTGCTTGGGTGTCGTGAGAACCAGAGAATCAGGACTTTCTGCTCCATTTTACACCCACCACTATATTAATGATACTCCTTTCCGAAAAGTTAATGTTTGACTCTGCAATGTCTCCCATTGTCAAACAACGGGTACATGGCTGATGGTGCTGGTTTTGGCTGTTGGGAGCCTTTAGGAAGTGAGGCCGAGCTGGAGTAAGTGAGCACTAGGCAATGAGCATCCTGGACTATCTTGTTGCTTCCTGACTACCAGAGTGATTGATGTAACCACCCTTTTGGGGTTCTTAATCTCATTAATTCAAAGAATTTTTAAAATGGATTCAAATGGGAGCTTCAGAACACTTTCATAAGAGATTGAAAGGAAAACCCTAGGGCAGACTAGCTGTAAACTGTGACTCCCACCCAGGGGAGGAGAGTGGAGGATAGATGGATAAAGCCATGCTAATTAACTGACATGGAGGCCAAATGCTTGAGTGACAAGTACCAGGGAATAGGGTATTAGAGAAAGAGTTAGAAAGCCCAACATTTTGGACAAATGTTAAGAAAAGTGTGCTGAGAAAAAAAAACCATAGAAGAAAAAGGAAAAATGACACTTTTCTGAGCGACTCAGAAAAATGAGCAGCTGTATGAATTTGCATGGCTATGGTGTGGTAAGTTACTGCATAGGAACTCGCTACTTCCCTAGGGGTTCTAGGAAGGAGAATGCATGGTATCTCCTTAAAGAGAAAATTATCCTACTCGTCTGTTCTTCATCATGACCCACAGTGAGACCCTCCACCTTAGGGGTTCTTCTCTTAGCCAAGTGACTGATTCACTCAGGTGGAATGCTGAGTCGTCACTGAGGCCAGAGTCTATGCCCTTGACAGAAGGATATTCACTCTTGTCTAACACTGTCACAGCTGCAAGTTGTTCCTGCCCCCATGTCTTCTCACCATGTGGGCATGTTTCCCCTGAGCTGTAAGCCATAATAAATCATTCATCCTTTAACAGATATTTCTGTCAAATAGTCTGCCATGGCAACAAGAAAGTAACTAATACAAATATCAACTTCCTATTTAAGTCATGAACCTTGTTGCTATAGAAAAATTCTGATGTTGAGTAACTTTATAAAGCAAAGGGGTTTGTCTAGCTCATGGTCCTGAGAGTTTTCAGAGGCTTGGTGCTAACCATGCTATGGAGAGGACTTCCTGGTAGAAGACATTGCAGGGGACAGAACACAATGGGAAGAAGCTATAATTTTATCAGAAAATCAAAGAGCCCACATTCCCACAATCCAATTTGAGACATCTCTAATTTATCTAAGGATCTCCCATTAGGTACCAACTCTTAAAGATCTTAGCTCCCAATATCACCATACCCAATCCATACACAAAGATAACAAGATAGACAGAAAAGATTTGCTCATGAGTAAAGCACACAAAAAGTGGAAACAGCTTGAATTCTATTAAGATGCCAGGGTGTTGAGGTGGGAGTGGGTGGGGGGAGTGGGAGGATCCTCATAGAAGCAGGGAGAGGGGAGGAGTGAAGGAGGGGAGGGGATAACATTTGAAATTTAAATACATAAAATATTCAAGAAAAATAAAATTAAAAAAAGAAGCTAAGCCATTGTACACAGAGCTAAAGACCAAAGAAGAACCACAACCTACCTTCTTTGTAAATTTATTTGTAAGATTAATTGTACACAAAATATTGGACACTATCAAATTCCTGGAAGGTAAATATGTTTACAGTATCAAATCAGAAGATACTTATTTCCATAGCTATTTTGTTGGTATTTTCCTACATCTTTCCTGGTGCCTTATATGACAGCATTTATTTTACTCACTTACACATGATTTATGGCACTGTATTTAGTTAAAAGTCATTGTTTCACTTAGTTCACTTGCTTTCCACATATGAGCTGTCTTATGTACACAGTGTATCTTTGGCTTTTTCTCATCAATACTCAACTCTCTTTACTTCATTGTCTACTGACTGATTTGACAAAGCCAAGGGATTAGGGGGAGCAGGGTGGAAAGAGGTTATGTATATGGAGGTCAGTTATATACCCCCTTCCTCCATAAGATTGGGAATCAAAGCTCATTGGAATATGATGTTTCCTATAGTTTTAGCCAAGTCCATTTCCTTCCATTCTTCTTTTTAAAAGATGTGTATATTTTTATTTTCTGTGTATGATTCTTTGCCCACATGTGCATGAACCAAAGTGTGTTTGATGCCCTCAGAGGCCAGAAAGAGGGCATGGAGTCCACTGAAGCTGGAGCTCTAGTATGGGTTCTGGGAACCAGCCTGCCTCAGATGAAGAACGGCAAGCACCCTAACCACTGAGCAATCTCCTCCGTCCTTCTTTCCTCCCGTCTTAG
Seq C2 exon
GCAGCCAACATGTGGGAAGAACTGAAGAAAGAACAGGACACGAATGCTCACTTGGAGAGGACGAGGAAGAATATGGAGCAGACGATTAAGGACTTGCAGAAAAGGCTGGATGAAGCAGAACAGACTGCTGTGGTGGGGAGTAAAAAGCAAATCCAGAAACTGGAATCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061038:ENSRNOT00000090307:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=NA C2=0.737
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]