GgaINT0119206 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90780143-90781758:-
Coord C1 exon
chr1:90781633-90781758
Coord A exon
chr1:90780314-90781632
Coord C2 exon
chr1:90780143-90780313
Length
1319 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
AAAGTTTGGTTGTTTTTCAGGCA
3' ss Score
6.82
Exon sequences
Seq C1 exon
AACACAAGCCTGATCAATCAGAAGAAGAAACTGGAGGGTGACATATCCCAGATGCAGAATGAAGTGGAGGAATCAATCCAGGAGTGCCGGAACGCAGAGGAAAAAGCCAAAAAAGCGATCACAGAT
Seq A exon
GTAAGTAGTCTGGTTCCTTGCTCATATTATTTCAGCTCCACAGTGTCCAAGGACAGCACAACATTTCTTAAGTATGTTACAAACCTGATATATCCCAAGTGTTCCACAGTAATCTGGAGGCAGCTGATGAAACTACAACATTAAACAGGCTGGAGGTAAAAAGAGAGGAAAGAATTCTGCTTGATCTACTTTATTTTTTCAAGAATGCAGATTCCACTGATCCTCAAGGTCTCAAGTCACATCACCTTTCAGTTGGGTAAATTGTATACTTCTGTAGGCTAAACCAGTTCAGACTGATCTAGCACTAACTGGCTGACTGGTCTACATTGAGTCTGATACGAGAAAGAAAATTACCGAGTCCAAAATGAGGTACCCTGTAACTAAGTGTCTATTAGGAAAACACAAGGACAAAGATCCAAGAAGACAGAGTGCATTCTTCCTATCAGGAGGAGGACATCATTTGGATGTCCTTCCATCATTAGAGTATACTTTAATTTCCCACGGACCTGGAGAAATGCGGAGTTGGGCTGACATATCACATCATGGAGTGCATGAATGAAGCTATTCTTGTACCGCAGTCTTCGCTTCTCAGGAGGCAGTGCTATTACTGCCTGCCAGAAAGAAGACACTGATTGTCCTTGATTCAACTCCAGCTTGGACTGCAGCAATTGCTGGCTTCCAATGGCTGCTCAGTGATGGATACAAAATCTGTAAATGGCTGTTGGTAGCAGGGAAACATGTCAAATCAGGAAAGAGCTAATAGGCGTACTCGTTACCAGCCTTGCAGAACGGCCAGGGACGATGACATAAGATGCTGAAACTGAGCTTTCTCTTTGCAGCACGCTACAGAAACTGCTGTGCTGTTACAGCTGCTCAGAAAGCTCTCATGGATGGCTGTTCAGGGAAATGTGCCTTCCAGTTGTTTTCATCTACTACCTACCAAGACCCCCTAACTCCAATACTAGATTTTTTAATAAGCTCTACTTGAAATGTCTGTAGTGAGTTGTACAGATTACGGGTGTTGTAAATGAGGACATTTACACACACCGCAAGGTTTCCAAATCCAAACAAATAACAAGTAAAGCAAACAAACAAGGACAACAAAGCCCACCTTAAATCACAGCATTAGAATAGAGGGGGGGAAAAAACGTATTCTCTCTGCCCGGGAGATACATGCAGTCACAAAATATTCTTTGGAGCTCTGGGTATAGTGAATGATCCAAGTAGTGGATGACTCAAGACAGATCTTCCATCAAGTTTTTACTGAGGCACAATTCAATGGCATAATAGAGGTGCTGTAAAGTTTGGTTGTTTTTCAG
Seq C2 exon
GCAGCAATGATGGCTGAGGAGCTTAAAAAGGAGCAAGATACTAGTGCTCACTTGGAGAGAATGAAGAAGAACATGGAACAAACCATTAAAGATCTGCAGAAACGACTGGATGAAGCAGAACAAATAGCCCTGAAAGGTGGCAAGAAACAGATCCAGAAACTGGAATCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=NA C2=0.719
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(15.3=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.5=100),PF0003816=Filament=FE(20.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCAATCAGAAGAAGAAACTGGA
R:
CAGTTTCTGGATCTGTTTCTTGCC
Band lengths:
278-1597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]