DreINT0099900 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24948673-24949052:-
Coord C1 exon
chr11:24948927-24949052
Coord A exon
chr11:24948844-24948926
Coord C2 exon
chr11:24948673-24948843
Length
83 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGC
5' ss Score
4.72
3' ss Seq
ATGATGCTTTCAACATGCAGGCA
3' ss Score
6.92
Exon sequences
Seq C1 exon
AACACTTCAATGCTCAATCAAAAGAAGAAGTTGGAGAACGATCTCGCCACACTTTCTAGTGAGGTGGACGATGCTGTGCAGGAATGTCGAAACGCTGAAGAGAAAGCCAAAAAAGCCATCACTGAT
Seq A exon
GTGAGCAGCTGGCATACTGTACAGTAGAGACTGTATGATATTGTGTTGTGAAGCGGATTTAATATGATGCTTTCAACATGCAG
Seq C2 exon
GCAGCCATGATGGCGGAAGAGCTCAAGAAAGAGCAGGACACCAGCGCTCATCTAGAACGCATGAAGAAGAACATGGAGCAGACCATCAAAGATCTGCAGCTGCGTCTGGATGAGGCTGAACAGATCGCTCTGAAAGGAGGCAAGAAACAAATCCAGAAACTGGAAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=NA C2=0.579
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(14.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.5=100),PF0003816=Filament=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTGTGCAGGAATGTCGA
R:
CTGTTCAGCCTCATCCAGACG
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]