GgaINT0010731 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2585850-2586287:-
Coord C1 exon
chr20:2586162-2586287
Coord A exon
chr20:2586021-2586161
Coord C2 exon
chr20:2585850-2586020
Length
141 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGA
5' ss Score
5.46
3' ss Seq
CAGTGCACTTGGCCTTGCAGGCT
3' ss Score
6.43
Exon sequences
Seq C1 exon
AACACGGGCCTGATCAACCAAAAGAAGAAGCTGGAGACCGATATCTCCCAGCTGAGCAGCGAGGTGGAGGATGCTGTGCAGGAGTGCCGCAATGCAGAGGAGAAAGCCAAGAAGGCCATCACGGAT
Seq A exon
GTAAGAGAGGGCTGGGGGTGGCACTGAGTGGCTTGGCAAGGGTATCCAGCATGCTGCTGGATGGGTGGGTGGAAGGAGAGGGTCTCAGAGCTCTCCCAGGCAGGGCTGCCCAGTGATGTCTCAGTGCACTTGGCCTTGCAG
Seq C2 exon
GCTGCCATGATGGCAGAGGAGCTGAAGAAGGAGCAGGACACGAGTGCACACCTGGAGCGGATGAAGAAGAACATGGAGCAGACCATCAAGGACCTGCAGATGCGCCTGGACGAAGCAGAGCAGATTGCTCTCAAGGGGGGCAAGAAGCAGATCCAGAAGCTGGAGGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.720 A=NA C2=0.614
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.6=100),PF0003816=Filament=FE(16.1=100),PF041569=IncA=FE(31.8=100),PF0017016=bZIP_1=PD(44.0=52.4),PF045827=Reo_sigmaC=FE(29.3=100),PF129622=DUF3851=FE(68.3=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(21.3=100),PF0003816=Filament=FE(22.0=100),PF041569=IncA=PD(24.0=54.4),PF045827=Reo_sigmaC=FE(40.0=100),PF129622=DUF3851=PD(15.0=15.8),PF0026115=Tropomyosin=PU(61.5=70.2),PF052669=DUF724=PU(27.7=49.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCCTGATCAACCAAAAGA
R:
CAATCTGCTCTGCTTCGTCCA
Band lengths:
249-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]