MmuINT0103634 @ mm9
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155458363-155458754:+
Coord C1 exon
chr2:155458363-155458488
Coord A exon
chr2:155458489-155458583
Coord C2 exon
chr2:155458584-155458754
Length
95 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGG
5' ss Score
4.17
3' ss Seq
GCTATTCCCTCCCCATCCAGGCA
3' ss Score
8.42
Exon sequences
Seq C1 exon
AACACAGGCCTCCTGAACCAGAAAAAGAAGCTGGAGGTGGACTTGGCCCAGCTGAGTGGGGAAGTGGAGGAGGCTGCGCAGGAGAGGCGTGAAGCTGAGGAGAAGGCCAAAAAGGCCATCACTGAT
Seq A exon
GTGAGGCTGGGCCAGGGTCTGGGGTGGGGGAAGGGTGAGTGTGTAGGGAGCTCAAAGGAGCCTCCCCTCCACTATGCTATTCCCTCCCCATCCAG
Seq C2 exon
GCAGCCATGATGGCCGAGGAGCTGAAAAAGGAACAGGACACGAGCGCACACCTGGAACGGATGAAGAAGACCCTGGAACAGACCGTGCGGGAGCTGCAGGCACGCCTTGAGGAAGCCGAGCAGGCCGCACTTCGGGGTGGGAAGAAGCAAGTGCAGAAGCTGGAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-Myh7b:NM_001085378:37
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.643 A=NA C2=0.825
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCTGGAGGTGGACTTGG
R:
TCCAGGGTCTTCTTCATCCGT
Band lengths:
178-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: