RnoINT0096577 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151148836-151149215:+
Coord C1 exon
chr3:151148836-151148961
Coord A exon
chr3:151148962-151149044
Coord C2 exon
chr3:151149045-151149215
Length
83 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGG
5' ss Score
4.17
3' ss Seq
ATGCTGTTTCCTCCCTACAGGCA
3' ss Score
11.61
Exon sequences
Seq C1 exon
AACACAGGCCTCCTGAACCAGAAAAAGAAGCTGGAGGTGGACTTGGCCCAGCTGAGTGGGGAGGTGGAGGAGGCTGCGCAGGAGAGGCGGGAAGCTGAGGAGAAGGCCAAAAAGGCCATCACGGAT
Seq A exon
GTGAGGCTGGTCCAGGGTTGGGGATGAGTGTGAACAGAGCTCAAAGAGTGCCTCCTCCCCACTATGCTGTTTCCTCCCTACAG
Seq C2 exon
GCAGCCATGATGGCTGAGGAGCTGAAAAAGGAGCAGGACACAAGTGCACACCTCGAACGGATGAAGAAGACCCTGGAACAGACAGTGCGGGAGCTGCAGGCCCGCCTTGAGGAAGCAGAGCAGGCCGCACTCCGGGGTGGGAAGAAGCAAGTGCAGAAGCTGGAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.825
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCTGGAGGTGGACTTGG
R:
TCCAGGGTCTTCTTCATCCGT
Band lengths:
178-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]