BtaINT0097250 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53540618-53543001:-
Coord C1 exon
chr1:53542876-53543001
Coord A exon
chr1:53540789-53542875
Coord C2 exon
chr1:53540618-53540788
Length
2087 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TCCCTTTCCTTCTTTTCTAGGTA
3' ss Score
13.54
Exon sequences
Seq C1 exon
AACACGAGTCTCCTCAGCCAGAAGAAGAAACTGGAGGTGGATGTAGCCAGGATGCAGAAGGAAGCTGAGGAGGCGATGCAGGGCTGTCAAAATGCAGAAGAGAAGGCCAAGAAGGCAGCCACTGAG
Seq A exon
GTGGGTCCATGACTGCCTGCTCACTCCTGTCTTCCAGAGCTGACAGGAGCAGTAGCCAGAAAGGATTCCATTGATTCTCCATATAGCCAGGGGGGAGATTAACTGACCCCTCTGCCTCTCTGCCCCCATTTTGGAAATTAGGCCAATCGGCTCCTCCCTTCCACCCAAACCACACAATGAAAAAAAGCAGCTGAATCACCATAAGCAAAATCTTGTGAAAGCAAGAGACTTTTGAAAATAGTCAAACCACTTTCCACTTGTGAATCAATATATCTGGTGTCTAGAAACAATTCTTCTTATGTTTCCTTACCCATAGCTACTTTTCCTGGGGCCTGTAATGGCTTCATGATGATGATCTGGCAAGAATACTTATTTCACTTATTTTTTTACAGCCCATACTGCTGCTTCAGTAACAGAATCGGGTCGGTGAGGAAGGCCTTCAGGATTGGTGCACCTTCCTTATCTGCAAGTTTAAAGTTGTTGATAGGTGTACTTTTCGTGAATGAGACCAAGCTCAGGGTTGACTGCCAGCCTTGACTGTACCTTTGTGGGCACTGAAAAGGGATAGACTCTGGACACCCACTGCAGATAGATGCAGATTTCTCTCAAAAGGCATGACAAACAGATGACAGTACTCAAAAAAAAAAGGCCATGGAAGGAGGGAGGTGGGAGAAAAGTCTGTGCGTCAAGGTCCCAGGCTTGCAGGTCCCAGCGCCTGCTGAGCAGAGCTTGGACTTGATCTCACCCTCCACTCACCACTTCCCCATGAGGTGCTCCTGCACAGTACGTCGGATGCACAAACACACGCAGCAGCCCAGAGCTCGCCCTGAGAATGAAAGCTGATCCTCTTGCTAAACAGTGTATGGGAACCGAAGAGACAAGATACTCAGTTAGGTTTTACATTAGTCATTTTAGGATTCAAAAGAAGGGGAAAACTTATGTCTGTATCTGTCTGAATCATCAAGCACTTGGGTGGTTAAAACTCTTACACCAAATCCTAGCTCTAGGTCACTGTAGAATCCAGAAGAATGGGGAAAGCATGCCTAGCATTCAGCCATTTTGTATCAACGCAGACACTCTGCTTTCTGATGGAAAAGAGGTGTGAGAAAGCTTGAAAGTGTTTGGCCAAGGGAAAAATAATATGCTCATTTCAAACATTTATGAAAATCTACATAGAAGTGGGGAAAAAAGAGCTTTTTGCTCCTGCTTGGTAAATTTATGCAGTCACACGTTAGGAAGACTCTATCTGCATAACTTCACCTTTAAAAGATCTTCTTGACAATGTTGAAAAATGAACTCACTACCTCTTCCCCTGCCTTAATTCTCCAGTAGTTCAGCTCTGAGCTCCAGCCCCACATAGCAAAACCCAGAGTTACCTCCATTATTTATTCTTTGCCCTCACCATCTGCACAGACGTCTCACACTTAAGTTATGCAGATGGTTGGTAACCTGATAGACAGAGAAACTTTGGCTGAGAGGGCAGTGTTCTTACATTAAAGGCACTGAGAGATTCATGAAACAGTTCTTAATAATGGCAGCAAGACACCGAGCCCTTGTATACACAATCAAAGCCGAGAGCAGGCTTTGCAAGAATTAACCATCCTTTTGCCAGATTATTGGCACCGAAAGCATCAGTTGCTGCCAAATTCCTAGAGCCTAAACTTGTTTGCAGTTGCAAGTCACAGAATTACAGAAGTGAGGCGTGAAAAAGATTCTTCTAAGCACACCACACTCTTCCTGGTGCGTGCTGCCATAGGACATGTCCTGGTGCTTTACTCAGTTAAAAACTCTGCCCTCAGTTGGTCGGCTTTCTTTGAATACAGATATTGTGTGATAATGTTCACGTGGTGTTTCATCTCTGGTCTGTTTCCACCACCCGTCACCCTGATCTCCAGTAGCTGCTGCTATCTTGATTGCCTTATGGTTACCAAACTCGAGGATCAGAAGTTAGGGAGAGCATAGTGGGAAGAGATGAAGTACAGAGGCGAGGCATGGCCTTTAGTCACATCAGGAACTGAAGACTAAGGACAAAAATGTTCAGCTCTGTTGGCTTCCAGATTATCTCAGTCCCTTTCCTTCTTTTCTAG
Seq C2 exon
GTAGCAAACATGTCAGAAGCACTGAAGAAGGAGCAAGATACCAATGCCCACTTGGAGAGGATGAGAAAGAACATGGAGCAGACAATTAAAGACTTACAAGAAAGGCTGGATGATGCTGAGCAGACAGCCATAGTGGGGAACAGAAAGCAAATCCAGAAACTAGAATCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399:ENSBTAT00000032372:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=NA C2=0.912
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(15.3=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.5=100),PF0003816=Filament=FE(20.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development