HsaINT0107655 @ hg38
Intron Retention
Gene
ENSG00000144821 | MYH15
Description
myosin heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr3:108391760-108394156:-
Coord C1 exon
chr3:108394031-108394156
Coord A exon
chr3:108391931-108394030
Coord C2 exon
chr3:108391760-108391930
Length
2100 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CCCTTTTTTTAACCCCCTAGGCA
3' ss Score
10.33
Exon sequences
Seq C1 exon
AACACAAGCCTCCTCAGCCAGAAGAAGAAACTGGAGGCTGATGTTGCCCGGATGCAGAAAGAAGCTGAAGAGGTGGTGCAGGAGTGTCAAAATGCAGAAGAGAAGGCCAAGAAGGCAGCCATTGAG
Seq A exon
GTGGGTCCCTTGACCACGTACTCAATCCTGTCTCCCAGAGTTCACTGGCGCAGTGGCCAAGGGGCAGGGCCACATCTGCAGCCAAAAAGTATTCCATTGATTTCCCATACAGCCAGGGGGAGGTTAGTCTGACCTCTCTGCCTCCCTGTTCTCATCTTGAAAAATTAGGCCAATTAGCTCCTCCCACCAACATACCCTGGTGATGAAAAGGAGCAGTTGAATTGCTATAAGCAAAACCTTATAAAAGCAGGAGTCTTCTTTTGTTTTGGTTAAGCCACTTTTCATTTGTGAATCAATACATCTAGTGTCTAGAAACAATTCTTTCTGTGTTTCCTTACAAAAAGCTATTTTTCCTAGGGTCTATAACAGTTTTATGATGATGATTTGGAAAGAATGTTTAATTCACTTATTTTTTTTACAACCTGTACTACTGCTTGAAGAGCAAAATCAGGTTGGTAAAAAAGGGTTTCAGGGCTGCTGTACTTTCTTTATTTTCCAGTTGATGATGGCAGTGATTTTCCTAAATGATGTTGAGCTCAGAGTTGGCTGCCAGCTTTGGCGCACCTTCATAGGGACTGAAAAAAGGCCACCCTCTGGGCACCCCCTGTGGGCAGATGCAGCACTTCTCTCAGCGGGCATGGTTAGCGGAAGGTACCACTGGGAAAAATATGTTAGTGGAGGGGGAGGTTTGTGTGTGGCAGATTCAGCTTTGAAGGTCCCAGAGCTTGCAGAGTGGGGCTTGGGGTTGGTTTCTGTCTCTGCTCACCCCTTCTCCATCAAGAGCTTTTGTGCAGCCCATCAAATGCACAGCCACATGCAACAGCCCTGATCCTCCCACATGAAGGGAAGCAGATTCCCCTGCTAAACTAGGAGACAGGACATTTGATTATATTTTACATTAGTCACTTTAAAATTCAAAGGAGGTGAAGAGCTTGTATCTATATTTGCTCAAGTTATTTAACACTTGGGGAACTAAACAAAACCATTGCACCAAATCCCAACCACCTAATCATTGTAGAATCCAGCCCCCTCTAAGAATGGGCAACCATGCCTATTCACTCATCCCTTTTGTATCAAGGCGGATATTCTGATCTCTGAGGAAAACGAGGTGTGTGAAATCTTGAAGATGTTTGATGGCCAAGGGAACAAATATGTGTAACATTTATGAAAATCCACACAGGTAGAAAGGAATAAAAATAGCTGCTCCTGTTTGATAAACATATGCAATCATATATTATGAAGATGCTCTCTGCTTAATCTTGCCTTGATAAGATTTTCTTGACAGTGTTGAAAAGTGAACTCATCTCTGACCCCAGCCTCCAAGCCTCCCACAGTTTAGCTCTGAGTCCCAACCCCACATCACAGAATGTAATTCATTCTTTGCCCTCACCATCTGCATAGAAGTCTCACACTTAAATTCTGCAGATGGTTGGTAACCTGATAGACAGAAAAGCTTGGGCTGTGAGGGCCATGTTCTTACATTAAATGTACCTAGAGATTCTCAAAACAGTTCTTAATGATTGCATTGAGACACCAAGCCCTTGTACACACAGCCAAAGCCAAGAGCAGGCTTCACAATTAACCTTTTTCTTGCCAGATTATTGGCAGTGAGAGCATCTGTTACTGCCAAATTCCTGGAGCCAAACTTGTTTGTGTAGTGAATCACAGAATTATAGAAGTGAGATGTGAAAAGATTTTTGTAGGCACTTCTCCATATCTTTCCTGGTGCATTAATGTGACACCGGTTACTTTATTCAATAATCAGTCATCCCAGTGCTTTATTCAATTAAAAGCCATTGCTTCAGTTGGTCATCTTTATTTTAATACAGGTGTTGCATAATAATGTTCATATGTTTCTTCATCTTTAGTCTGTTTCCACCACTCCTTACCCTGTTCTCTCCTGTAGCTACTGCTGTCTCTATTGCCTTACTGTTAACAAACTCGAGGGTGGTAGTGGTTAGGGAGATTATAATGGGAAGAGATCACATACATAGAGGCAAGGCGTGGCAGCCAGTCAGACCAGGAACTAAAGATCATGGGTAAAAATGTTAAGATCAATTGACTGCTGAACTAGCTCAGTCCCTTTTTTTAACCCCCTAG
Seq C2 exon
GCAGCAAACTTGTCAGAAGAACTGAAGAAGAAGCAAGACACCATTGCCCACTTGGAAAGGACAAGAGAAAATATGGAGCAGACAATTACAGACTTACAGAAAAGGCTGGCTGAAGCTGAACAGATGGCCCTGATGGGGAGTAGAAAGCAAATCCAGAAACTAGAATCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144821:ENST00000273353:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.596
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development