RnoINT0096457 @ rn6
Intron Retention
Gene
ENSRNOG00000061038 | Myh15
Description
myosin, heavy chain 15 [Source:RGD Symbol;Acc:1565858]
Coordinates
chr11:54204775-54206513:-
Coord C1 exon
chr11:54206379-54206513
Coord A exon
chr11:54204787-54206378
Coord C2 exon
chr11:54204775-54204786
Length
1592 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
ACATACATTCTGTTTTCCAGGTT
3' ss Score
9.35
Exon sequences
Seq C1 exon
GAGGCACAGGCTAATCAATACCTTTCTAAGTATAAGAAGCAGCAGCACGAGTTGAACGAAGCCAAGGAGAGAGCAGAGGCCGCAGAATCGCAAGTCAATAAACTCAGAGCTAGAGCGAAGGAGCTTGAGAGAAAG
Seq A exon
GTACAATCCCTCGGAAACTCTGTTGCTTCAGGGCTCAGGGCATCATGTGGGTTAGTACAGCAAGGAATGTCTTGCTTTTCTTTTCAAATCTTTTTTTTTTTAATAGCCAAACAAGTTCAAATAAAGTTCTTCCCCTACTTATTAAATTCTACGTATCCAGGGAGTAGGGAAGTGATAAGCGTTTGAAATGGAAAAACATTCTAGTTATATTTTTTTAAGTCCTTCATGCCAGGTTAACTTGTGAGTGCCAAGCCTTGGACCTTTAATTCATTTGTGCAGAATACTGAGGAATTCACGGAGCAAAGGGGATTTCTAAAGTACAAACAGACCTTGAAATTCTGAGTGAATTCTTTTCACAGTGGACAAGCATGTGAGTTTGTATCAGGTCAAACTGAAAACTAGGGAGAAGGTGGTCAGAAGTGAGCCAGGGGTCGACCACAAATTGTGGAATCCTGCTTTCTAGGTCCCAGTATCCACCTTCTGACTCTTCCCTGAAGCACGGAAATGTCTTTCCATGTCCATGTCAGGGAGGCCAGTGCTTCTCTGTAAAGAGAAACTGGAAGGAACAAGAATGAACTCAGAAATGGATGCTGGGCAGGAACAAAGTGTCTCTGCACCCTCACTGAGAGTTTATTGAAACATGGTTTGTAAATGACATCTGCCTTTAGGAGAAGGGAATTAGAAGAAACTGAATAAGTAGCTACCTTTTATACAATGTCTGAAAAGCAGTGAGCACAGTTCCCAGAACAGATGGAGGCATTCACTTTCAAAATTTGGTACATGCCTAGCCTACTCATTTTTGGTAAATGAGTTACTGGTAGCCCTTCAAGGTAAGCTGACAGGATTGCCAATAATAAATATCGATCTTGTTGGAGGAGGCTAAAGTTGGCTCCATGGAAGATGCTGAGATCTAAGTCTGAGAAATTTGAGTCATTGGTAGGCCAGAGAGATCTCACAGCTGCCTGAACGGTTGCCTTAAGTGTAAGGCCCAGTTAGAGGGCTCTAGGGGAGTGGCTTGACTGCTGGCCTTACCTAGAGAAGTGTCACCCCACTGATTTGGGGTCTCTCCAAGGCAGAGTCTGTCCAGCAAAGCCACAGAAGGATTTGCTTACGGAGGGGCCTTCAAAACACACCCACATTTCACCTTGTCACAGTTGTGTCCAAGAATGAATAAAACAAGTGAATCGGCAATTGCTTCTGTCAGGAGATGAACAGGGAAACCTTGCTGAGCAGTGTGATGACTAATTGCCCCCTATTCACATAAGAGCCTAAAATCCTTCAACTGCTGTGCACAAAGGAAAGGGGTTTTCTGATGCACGGGTCTGGAGCAAACCTGTGATGTGTTTGCAGCGTCTTTTCCAGTGGGGGAGGGGAGGCAGAAATGAAGAGTGACAGCCAGCCCTTGGGGTGAGTCACCAGAGTCTGCTTTCTGCTAGTGGATAATTGCCTAAACCCCTGCTTTTTTGGGGGGGCGGCATGGAGAGCTGTTGAGGCCTGCTTCCCTCTGGAAAGGGTTCACATGGGTCTGAGTGTGCCCTGCCATCCAGTCACTGGATGTCGTGACACACACTGACATACATTCTGTTTTCCAG
Seq C2 exon
GTTCGAGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061038:ENSRNOT00000090307:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]