RnoINT0096466 @ rn6
Intron Retention
Gene
ENSRNOG00000046276 | Myh3
Description
myosin heavy chain 3 [Source:RGD Symbol;Acc:3138]
Coordinates
chr10:53630425-53630754:+
Coord C1 exon
chr10:53630425-53630528
Coord A exon
chr10:53630529-53630615
Coord C2 exon
chr10:53630616-53630754
Length
87 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGA
5' ss Score
7.3
3' ss Seq
TGCTGTTCTTTCCACTGCAGAGT
3' ss Score
9.97
Exon sequences
Seq C1 exon
AGTTGCTGCTGATTACGACCAACCCTTACGACTACCCATTCATCAGCCAGGGTGAAATCCTGGTGGCCAGCATCGATGATGCTGAGGAACTGTTGGCTACAGAC
Seq A exon
GTAAGAAGGACTTACGGTAGAGAGGTGGGAGAACCTCCACGTAGGGAGGGCAATGAATGGGCAGACATGCTGTTCTTTCCACTGCAG
Seq C2 exon
AGTGCCATTGACATCCTGGGCTTCACCCCGGAGGAGAAATCTGGACTCTATAAACTGACAGGGGCTGTGATGCATTATGGGAACATGAAGTTCAAGCAGAAGCAGCGAGAGGAGCAAGCTGAGCCAGATGGCACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046276:ENSRNOT00000004147:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.277
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCATTCATCAGCCAGGGT
R:
CTCTCGCTGCTTCTGCTTGAA
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]