RnoINT0096510 @ rn6
Intron Retention
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33617162-33617730:-
Coord C1 exon
chr15:33617554-33617730
Coord A exon
chr15:33617308-33617553
Coord C2 exon
chr15:33617162-33617307
Length
246 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CATTTAATTCTCTCTGCCAGCTG
3' ss Score
8.34
Exon sequences
Seq C1 exon
GTTAAAAACCTGACAGAGGAGATGGCCGGGCTGGACGAGATCATTGCCAAGCTGACCAAGGAGAAGAAAGCTCTTCAAGAGGCCCACCAGCAAGCCCTAGATGACCTTCAGGCTGAGGAAGACAAGGTCAACACACTGATCAAGTCTAAAGTCAAGCTGGAGCAGCAGGTGGATGAT
Seq A exon
GTAAGTGGTGAGAGCTATGCTCCATCCTTCTCAGATCAGGACTTCATAGCCAACGCCTGTAGGTGAGGAATCTCCCCCTCTGCATCTAAGTCCTACGACCCGGGGAGCTTCTCCGCTCTCTGTGATTCCTCGTCAGGCAAATCTCCAAGTACCAACCCCCATGGACATTCAGTCAGGACAAGACTAAGGCACACACTGTGAATCCCAGTCTTTCCAGCACCTTATTCATTTAATTCTCTCTGCCAG
Seq C2 exon
CTGGAGGGATCCCTGGAGCAGGAGAAGAAGGTGCGCATGGACCTGGAGCGAGCAAAGCGGAAGCTGGAGGGTGACCTGAAGCTGACCCAGGAGAGCATCATGGACCTGGAGAACGACAAGCTTCAGCTGGAGGAAAAGCTCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757:ENSRNOT00000023302:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=NA C2=0.224
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(28.8=93.2),PF0157614=Myosin_tail_1=PU(41.4=49.2)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(35.5=79.6),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGACAGAGGAGATGGCC
R:
GCTGAAGCTTGTCGTTCTCCA
Band lengths:
298-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]