BtaINT0097337 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040053 | MYH7
Description
myosin-7 [Source:RefSeq peptide;Acc:NP_777152]
Coordinates
chr10:21363826-21364660:+
Coord C1 exon
chr10:21363826-21364002
Coord A exon
chr10:21364003-21364514
Coord C2 exon
chr10:21364515-21364660
Length
512 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
ATTTTTACTTTCTCCACCAGCTG
3' ss Score
8.39
Exon sequences
Seq C1 exon
GTGAAGAACCTGACAGAGGAGATGGCTGGGCTGGATGAGATCATTGCCAAGCTGACCAAGGAGAAGAAAGCTCTGCAAGAGGCCCACCAGCAGGCCCTGGATGACCTTCAGGCTGAGGAGGACAAGGTCAACACCCTGACCAAGTCTAAAGTCAAGTTGGAGCAGCAGGTGGATGAT
Seq A exon
GTGAGTAGGAACAACCATGCTTCCTTTGTCTCTCTCAGGTCAGGATTTTGCAGGCAACGCCAATGGCAAGGGGTTTTCAATCCCTAAAACTAATTTCCATCCCACCCGGGGCCCTTTTCTTGCTGTCCATGCTAAGTCACTTCAGTTGTGTCTGACTCTTTGTGACCCTATGGACAGTAACCCACTAGGCTCCTCTTGTCCATGAGATTCTCCAGGCAAGAATACTGGAGTGAGTTGCCGTGCCCTCCTCCAGGGGATCTTTCTGACCCAGGGATTGAACCTGCAGCTCCTGCATTGCAGGCGAATTCTATACCACTGAGCCACCTGTGAAAGCCCCTTTCTTTCTACAGTTCTTCACTAGGCTGGGTCTCTGAATGCTTCATCTCTGCCGGGATGATTCTGCTGGCTTGACTTCCAGTCCCACTGGACTTTGGGTTTAGAAGGGAGCAGAGGGGGATGTATTGTGGACCTCAGGTTTTCTACACCCTGTTCATTTTTACTTTCTCCACCAG
Seq C2 exon
CTGGAGGGATCCCTGGAACAGGAGAAGAAGGTACGCATGGACCTGGAGCGAGCTAAGCGGAAGCTGGAGGGTGACCTGAAGCTGACCCAGGAGAGCATCATGGACCTAGACAATGACAAACTGCAGCTGGAAGAAAAGCTCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040053:ENSBTAT00000007359:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.525 A=NA C2=0.245
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(28.8=93.2),PF0157614=Myosin_tail_1=PU(41.4=49.2)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(55.7=79.6),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGAACCTGACAGAGGAGA
R:
TGAGCTTTTCTTCCAGCTGCA
Band lengths:
319-831
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development