GgaINT0129032 @ galGal4
Intron Retention
Gene
ENSGALG00000000779 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr18:311561-312516:-
Coord C1 exon
chr18:312340-312516
Coord A exon
chr18:311707-312339
Coord C2 exon
chr18:311561-311706
Length
633 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGA
5' ss Score
5.46
3' ss Seq
GTATGTTTTATGTGTTCTAGCTT
3' ss Score
7.33
Exon sequences
Seq C1 exon
GTTAAGAATCTGACTGAGGAGATGGCAGCTCTGGATGAAAATATTTCTAAACTCACCAAGGAGAAAAAGGCCCTCCAGGAGGCACACCAGCAGACACTGGATGACCTGCAGGCTGAGGAGGACAAAGTCAGTACACTCACCAAAACCAAGACCAAACTGGAGCAGCAAGTAGATGAT
Seq A exon
GTAAGACAAAAAATATGGAGTTGTGTAAGTGGATGCTCTGACAGATCAGGAGAGTAGAAATCTGTAGTTGGGAGTGTAAACAACATTTAGAACAGCCAAGCCAGCTCTAACAATTTTACCTAATAACTTACAGGCAGTTGATAGGGTGTTGTGGAATCCAGTATATTTTCCATCTTTTCTTGGCTGTTTAATCTGTCTTCATCACTGGATATTTCAGCTTTTTAGACTTTTGTACTGCACATTTTAACCAATTACCTGCAGCAGCTATGTGAGACAGTTTGAGGCTTGTTGCAGACCTATGTAGTTTATGTGTATAATCCAGAAAGCTATGGACTCTGGGAAATCGTCAATATTTTGCAGTCTGTATGGTAGGAACTAAAGTCACTGGAAATCTTTAATTTCTTTATTTTTCAATAACTTCCATTTCACCTGTGCACACTCAAGTTGTGACCAGCTTAACATCAGAAACCAAACCTTCATCCTGTAGTGAGAGTGGGAGGAGATGAGAACATATATAGGATCTGGTTGTTTCCTCTAGTTTTGATTTGCAACTCTAGTTAAGATTTTTACATCAAGAATATTTACTACTGAAGTATATTTTGTGTGTTTCATAGTATGTTTTATGTGTTCTAG
Seq C2 exon
CTTGAAGGGTCTCTGGAACAAGAGAGGAAACAGCGAATGGACCTGGAGAGAGCAAAGAGAAAACTGGATGGGGATCTGAAAATGTCTCAAGATTCCATCATGGATTTGGAAAATGATAAGCAACAGATGGATGAAAAGCTAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000779:ENSGALT00000001184:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(42.3=100),PF0003816=Filament=PU(7.1=30.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(24.8=69.4),PF0003816=Filament=FE(18.8=100),PF0157614=Myosin_tail_1=PU(3.6=28.6),PF123293=TMF_DNA_bd=PU(10.0=16.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATCTGACTGAGGAGATGGCA
R:
TTTTTAGCTTTTCATCCATCTGTTGC
Band lengths:
318-951
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]