HsaINT0107557 @ hg19
Intron Retention
Gene
ENSG00000006788 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:7571]
Coordinates
chr17:10223668-10225025:-
Coord C1 exon
chr17:10224849-10225025
Coord A exon
chr17:10223814-10224848
Coord C2 exon
chr17:10223668-10223813
Length
1035 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGG
5' ss Score
4.17
3' ss Seq
CTACCTGTGTGTCTTCTCAGCTT
3' ss Score
8.77
Exon sequences
Seq C1 exon
GTAAAGAATCTTTCCGAAGAAATGACAGCACTTGAAGAAAACATTTCCAAATTGACCAAAGAAAAGAAATCTCTACAGGAGGCCCATCAGCAAACACTGGATGATCTTCAGGTGGAAGAAGATAAAGTCAATGGTCTAATCAAAATAAATGCCAAGCTTGAACAGCAAACAGATGAT
Seq A exon
GTGAGGATATTTTACTACTATGCTTTAGCATTTATCACTTGTGGAAGCACAGACAAGAGACAGTCTAACTAGGACACAGGGCTTGAGAGGTCAGACTCTGGAATCAGCATCCCTAAATTCAGATCTCAGCCCCACCCTGACCCTGAAGGAGTCTGGGATACTGAGCAAGCTGCTTACCCTTGCAAAGCCTCAGTTTGTGCCTTGTGAAATGGCGATGTAAATAGCTCCATCTCAGAGGGTTTTCACAGAAAGCTCAGCACACAGAAAGTGTTCAGTAAAACATAGCTGCTACTATTGCTATCATCACCATCATCATTATTATTAGCATCCACTTGTAGGTCCTTTGGGTTCCAAAACCTCCAATCCTGTTGTAACGTTACTAAAGATGAGTTCCATTTGTGGCCATGAAAATTACTATTTCTGCCCCCGTCACATGACATTATTGTTCTTGATGTAAGAGCCACGTTTGAAGTTTTCAGGTTTTACTCACTATTGTGGCTAGAGATTTTCTAGATAACTTTAATGTTTCTGAGCCCAGGGTAGGTGTGCTCCTCCTCTACACCCTTTTCCTGTTCCTATGTATGCATGTGTGTATGTGCACACACATACACACACACGAATTCCTTGCCTCCCATGGTTGCATAATGTTAGCAGGCAAGGCGTGATGGTGTGTAGCACAGACCTTCACAGTGCTGTCCACAGAAGCCCCCATTTGTATTGTCTGTGCAAGAGTGTGCACCCATGGGTACCATACCCCTACAGGGAACATAGTCTGGGCCAGGCCAGGTGGGAATCAGCTGAGAGAGGCACCAGGAGGCCCCTGAGGGATCCAGCCCCACCCTGGGTAGTCTTTTCTGGAAGACAGAAGAGAGGGGAGGTAGGGGCAAGACTTGCTTCCTCCTGGGGCCAGAGGCTTGCAGCCAGCACCCTACAGGAGCCCCAGGAAGCCCCAGGCCACGTGTATGGCTACACTGGATAAACGGGGCAAACACTTCCCCAGCAGGGGCTTAATTTTCTACCTGTGTGTCTTCTCAG
Seq C2 exon
CTTGAGGGTTCCTTAGAGCAGGAGAAGAAACTGCGGGCGGACTTGGAAAGGGCGAAGAGGAAGCTGGAAGGAGATCTGAAAATGTCCCAGGAATCCATTATGGATCTAGAAAATGACAAGCAGCAAATAGAAGAGAAATTGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-MYH13:NM_003802:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.729 A=NA C2=0.612
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAATCTTTCCGAAGAAATGACAGC
R:
TTTCAATTTCTCTTCTATTTGCTGCT
Band lengths:
318-1353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)