MmuINT0103309 @ mm10
Intron Retention
Gene
ENSMUSG00000060180 | Myh13
Description
myosin, heavy polypeptide 13, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339967]
Coordinates
chr11:67353573-67354792:+
Coord C1 exon
chr11:67353573-67353749
Coord A exon
chr11:67353750-67354646
Coord C2 exon
chr11:67354647-67354792
Length
897 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGC
5' ss Score
7.1
3' ss Seq
CTCCACTTGTGTCTTCCCAGCTC
3' ss Score
7.33
Exon sequences
Seq C1 exon
GTGAAGAACCTCTCTGAAGAAATGACAGCGCTTGAGGAAACCATTTCCAAACTGACGAAAGAAAAGAAGTCTCTGCAGGAAGCCCATCAGCAGACCCTGGATGACCTGCAGGTTGAAGAAGATAAAGTCAACGGTCTCATCAAAATCAATGTCAAGCTGGAACAGCAGACGGATGAC
Seq A exon
GTAAGCACATGTGGCTTCCGAGCCTTGCAAAGATGGATCAGTCTAGAGAGCTCAGAGTCTGGAGTCAGAGCCTGAGTCCAGATTCCAGCTGTGCCCTGACCCCAAACACACAGGTCCAAGGTGACCAGCAGGTCATGTGACCTTGGGAGCCATCAGTTCCCACTGATGAATTAGGGGTACATACAAATAGCTAGACTTCAGAGGGCATCTAAGGAAAGAGTTCAACACATAGCATGTTCAGTAAAGCATAAACCATTGCTACTGTTAGCATCTACTTATAAGCATTCCAGGTTCTGAAACCTCTGATTCTTTTCCACCGTGTTTAGAGCCTCACGCTAGGCAAGGATGTAGCTCAGTGGTACAGCATGCATGAGACCCTGACTTCCACCTGCAACACCTCAAAAACAAAACAGAAAAACAGGCCAGGGGAAGGAACCTTTTTTTTTCCTCCTTCATGATGAGTTACTGTTCATGACACAAGAGCCAGGTTTCAAGTTAGCTGGTTTTATTCCCTCTATGGCTAGACCTTTCGCCTGTTTCTACTTTAATAAGGCCAGTGTGGGTGTGTTCCCTGATACACCCTTCTTTTCCTGTGCCTTGCACACATACTTAAGTTTCTTGCCTGACTACCCTCAGGGCTGAGTGACACAGGTGAGGGAGGGGTGATGGGCCCCCACTTATCCTTATAGGAGATTATGGCCTGTGACAGGCCAAGTGAGAATGATCTGAAAAGAGGTACCTGGAAGCCCCCAAGATATCCAACCCCTAAGATACAGAACACAGAAGTGGAGGACAGAAGGCTGGCTTCCTTCTTTCTGGGGCTGGTGGCCACAGGGCATGGGTGTGACTGTGCTGTCTGATGTGAGTAAGCCCGCTTCTCCACTTGTGTCTTCCCAG
Seq C2 exon
CTCGAGGGCAGCTTGGAGCAGGAGAAGAAACTGCGGGCTGACCTGGAGAGAGTGAAGAGGAAGCTGGAAGGAGACTTGAAGATGTCCCAGGAATCCATCATGGATCTAGAGAATGACACGCAACAGTTGGAGGAGAAACTGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060180:ENSMUST00000108684:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.644 A=NA C2=0.612
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAACCTCTCTGAAGAAATGACA
R:
TCAGTTTCTCCTCCAACTGTTGC
Band lengths:
318-1215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types