MmuINT0103309 @ mm9
Intron Retention
Gene
ENSMUSG00000060180 | Myh13
Description
myosin, heavy polypeptide 13, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339967]
Coordinates
chr11:67167075-67168294:+
Coord C1 exon
chr11:67167075-67167251
Coord A exon
chr11:67167252-67168148
Coord C2 exon
chr11:67168149-67168294
Length
897 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGC
5' ss Score
7.1
3' ss Seq
CTCCACTTGTGTCTTCCCAGCTC
3' ss Score
7.33
Exon sequences
Seq C1 exon
GTGAAGAACCTCTCTGAAGAAATGACAGCGCTTGAGGAAACCATTTCCAAACTGACGAAAGAAAAGAAGTCTCTGCAGGAAGCCCATCAGCAGACCCTGGATGACCTGCAGGTTGAAGAAGATAAAGTCAACGGTCTCATCAAAATCAATGTCAAGCTGGAACAGCAGACGGATGAC
Seq A exon
GTAAGCACATGTGGCTTCCGAGCCTTGCAAAGATGGATCAGTCTAGAGAGCTCAGAGTCTGGAGTCAGAGCCTGAGTCCAGATTCCAGCTGTGCCCTGACCCCAAACACACAGGTCCAAGGTGACCAGCAGGTCATGTGACCTTGGGAGCCATCAGTTCCCACTGATGAATTAGGGGTACATACAAATAGCTAGACTTCAGAGGGCATCTAAGGAAAGAGTTCAACACATAGCATGTTCAGTAAAGCATAAACCATTGCTACTGTTAGCATCTACTTATAAGCATTCCAGGTTCTGAAACCTCTGATTCTTTTCCACCGTGTTTAGAGCCTCACGCTAGGCAAGGATGTAGCTCAGTGGTACAGCATGCATGAGACCCTGACTTCCACCTGCAACACCTCAAAAACAAAACAGAAAAACAGGCCAGGGGAAGGAACCTTTTTTTTTCCTCCTTCATGATGAGTTACTGTTCATGACACAAGAGCCAGGTTTCAAGTTAGCTGGTTTTATTCCCTCTATGGCTAGACCTTTCGCCTGTTTCTACTTTAATAAGGCCAGTGTGGGTGTGTTCCCTGATACACCCTTCTTTTCCTGTGCCTTGCACACATACTTAAGTTTCTTGCCTGACTACCCTCAGGGCTGAGTGACACAGGTGAGGGAGGGGTGATGGGCCCCCACTTATCCTTATAGGAGATTATGGCCTGTGACAGGCCAAGTGAGAATGATCTGAAAAGAGGTACCTGGAAGCCCCCAAGATATCCAACCCCTAAGATACAGAACACAGAAGTGGAGGACAGAAGGCTGGCTTCCTTCTTTCTGGGGCTGGTGGCCACAGGGCATGGGTGTGACTGTGCTGTCTGATGTGAGTAAGCCCGCTTCTCCACTTGTGTCTTCCCAG
Seq C2 exon
CTCGAGGGCAGCTTGGAGCAGGAGAAGAAACTGCGGGCTGACCTGGAGAGAGTGAAGAGGAAGCTGGAAGGAGACTTGAAGATGTCCCAGGAATCCATCATGGATCTAGAGAATGACACGCAACAGTTGGAGGAGAAACTGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060180-Myh13:NM_001081250:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.644 A=NA C2=0.612
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(29.4=100),PF0157614=Myosin_tail_1=PU(17.5=11.9)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(1.0=4.1),PF0157614=Myosin_tail_1=PD(77.5=63.3),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAACCTCTCTGAAGAAATGACA
R:
TCAGTTTCTCCTCCAACTGTTGC
Band lengths:
318-1215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: