MmuINT0103543 @ mm9
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:55571411-55571967:-
Coord C1 exon
chr14:55571791-55571967
Coord A exon
chr14:55571557-55571790
Coord C2 exon
chr14:55571411-55571556
Length
234 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CATTTTATTCTCTCTGCCAGCTG
3' ss Score
8.86
Exon sequences
Seq C1 exon
GTTAAAAACCTAACAGAGGAGATGGCTGGGCTGGATGAAATCATTGCCAAGCTGACCAAAGAGAAGAAAGCTCTGCAAGAAGCCCACCAGCAAGCCCTCGATGACCTGCAGGCTGAAGAAGACAAGGTCAACACGCTGACCAAGTCCAAAGTCAAGCTGGAGCAGCAGGTGGATGAT
Seq A exon
GTAAGTGATAAGAGCCATGTTCCGCCTCTCTCAGATCAAGACTCTGTAGCCAACGCCTATAGAGAAGGAGTTTCCCTCTGCATCTAACTCCTATGACCCCAGGAGCTTCTCTGTTCTCTGGGATTCCTCATCAGGCAAATCTCTGGAGTACCAACCCCGATGGACTTCAAGTTTAAGGCGTACACTGTGAATTCCAGTCTTTCCAGCATGTATTCATTTTATTCTCTCTGCCAG
Seq C2 exon
CTGGAGGGATCCCTGGAGCAGGAGAAGAAAGTGCGCATGGACCTAGAGCGAGCCAAGCGGAAGCTGGAGGGAGACCTGAAGCTGACCCAGGAGAGCATCATGGACCTGGAGAATGACAAGCTTCAGCTGGAAGAAAAGCTCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-Myh6:NM_001164171:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.525 A=NA C2=0.327
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(20.9=61.0),PF0157614=Myosin_tail_1=PU(43.9=49.2)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(53.0=71.4),PF0157614=Myosin_tail_1=PU(31.1=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGGCTGGATGAAATCAT
R:
GAGCTTTTCTTCCAGCTGAAGC
Band lengths:
295-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: